Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30284
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0934 - 9273325-9273807,9273898-9274062,9274155-9274235,927...    27   4.0  
05_01_0294 - 2291175-2291223,2291591-2292039,2292143-2292211,229...    26   6.9  

>12_01_0934 -
           9273325-9273807,9273898-9274062,9274155-9274235,
           9274347-9274475,9274590-9274661,9274758-9274826,
           9275143-9275514,9275590-9275703,9275729-9275848
          Length = 534

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
 Frame = -2

Query: 308 FFFHVLLKTFKMKTIYFVLLISVCAVSAIYLPDDSNSA-----DLDKYKSESFGSKLY 150
           FFFHV+L    M+T  ++L +   A  A    DDS+S+     D D  +  SF S+++
Sbjct: 310 FFFHVVLIRKGMRTYDYILAMRE-AAQAFDPFDDSDSSSDESIDFDSPERPSFLSRIF 366


>05_01_0294 -
           2291175-2291223,2291591-2292039,2292143-2292211,
           2292397-2292449,2292492-2294478
          Length = 868

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 187 SRSAEFESSGKYIALTAQTLISKTK*MVFILKVFSS 294
           ++ ++F ++ KY  LTA TLI K K    IL+V+ S
Sbjct: 731 NKRSDFSTALKYANLTADTLIKKLK---KILEVYMS 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,438
Number of Sequences: 37544
Number of extensions: 41074
Number of successful extensions: 147
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)