Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30284
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical pr...    26   6.2  

>Z75711-4|CAB00030.1|  134|Caenorhabditis elegans Hypothetical
           protein K02B12.6 protein.
          Length = 134

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
 Frame = -2

Query: 257 VLLISVCAVSAI-------YLPDDSNSADLDKYKSESFGSKLYS 147
           +L++SVC + A+       Y P   +++    ++++++GSK Y+
Sbjct: 7   ILVLSVCTIGALAVMEHNSYYPGGHSTSYYQPFQTDTYGSKYYN 50


>Z68009-1|CAA92003.1| 1095|Caenorhabditis elegans Hypothetical
           protein R09A8.1 protein.
          Length = 1095

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 305 FFHVLLKTFKMKTIYFVLLISVCAVSAIYLPDDSNSADLDKYKSESFGSKL 153
           FFH+L    K   +  +L IS+  V +  + +  NSA   K   +  G+ L
Sbjct: 658 FFHILKSKRKFYILLHILYISINLVKSFLVFNSQNSAPPIKPMKKEAGALL 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,805
Number of Sequences: 27780
Number of extensions: 44900
Number of successful extensions: 115
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)