Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30283
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.057
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.057
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   2.8  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 683  PPWALATLLISSH-INTVWPHQLRQTTQ--SFLLWHKE 579
            PP +L T +++S  IN  W H+ + TT+   ++L +KE
Sbjct: 910  PPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKE 947


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 683  PPWALATLLISSH-INTVWPHQLRQTTQ--SFLLWHKE 579
            PP +L T +++S  IN  W H+ + TT+   ++L +KE
Sbjct: 906  PPNSLETAMVASRSINVKWQHKSQDTTEVTKYILQYKE 943


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 32  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 130
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 61  MLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVIN 93


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 604 WVVWRSWCGQTVLIWELINNVAKAHGGYS 690
           ++VWR     T  +   +  +  AHGG S
Sbjct: 399 YMVWRETISSTATLGFRVEGIKLAHGGSS 427


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 604 WVVWRSWCGQTVLIWELINNVAKAHGGYS 690
           ++VWR     T  +   +  +  AHGG S
Sbjct: 314 YMVWRETISSTATLGFRVEGIKLAHGGSS 342


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 604 WVVWRSWCGQTVLIWELINNVAKAHGGYS 690
           ++VWR     T  +   +  +  AHGG S
Sbjct: 633 YMVWRETISSTATLGFRVEGIKLAHGGSS 661


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 23  FLKMLGAISRVGSGILAVKSVAEKSLSEC 109
           FLK LGA+   GSG  AV  V   S   C
Sbjct: 172 FLKKLGAVDIAGSG--AVHLVGGSSALAC 198


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 32  MLGAISRVGSGILAVKSVAEKSLSECGKIVAVN 130
           MLG +S +G+G++    ++ KSL     +  +N
Sbjct: 27  MLGFVSVMGNGMVVYIFLSTKSLRTPSNLFVIN 59


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 269 RSPRLVLEVAQHLGENTVRTIAMDGTE 349
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 338 DGTEGLVRGQPVLDSGSPI 394
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,791
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)