Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30283
(706 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 175 2e-44
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 175 2e-44
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 175 2e-44
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 58 6e-09
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 44 1e-04
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 44 1e-04
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 44 1e-04
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 44 1e-04
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 44 1e-04
At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) / 1,4-alp... 31 0.74
At3g54040.1 68416.m05975 photoassimilate-responsive protein-rela... 31 0.74
At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN ... 30 1.7
At5g42930.1 68418.m05234 lipase class 3 family protein low simil... 29 2.3
At1g56630.1 68414.m06513 lipase class 3 family protein contains ... 29 2.3
At1g74250.1 68414.m08599 DNAJ heat shock N-terminal domain-conta... 29 4.0
At1g69410.1 68414.m07972 eukaryotic translation initiation facto... 29 4.0
At1g45201.2 68414.m05185 lipase class 3 family protein Since thi... 28 5.2
At3g62640.1 68416.m07036 expressed protein 28 6.9
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 9.2
At4g02485.1 68417.m00337 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 9.2
At3g52640.1 68416.m05799 nicastrin-related contains weak similar... 27 9.2
At1g28380.1 68414.m03487 expressed protein 27 9.2
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 565
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 566 VDLLAPY 586
VDLLAPY
Sbjct: 215 VDLLAPY 221
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 628 GQTVLIWELINNVAKAHGGYSVFAGV 705
G+TVLI ELINNVAKAHGG+SVFAGV
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGV 261
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 98 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 157
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 565
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 158 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 217
Query: 566 VDLLAPY 586
VDLLAPY
Sbjct: 218 VDLLAPY 224
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 628 GQTVLIWELINNVAKAHGGYSVFAGV 705
G+TVLI ELINNVAKAHGG+SVFAGV
Sbjct: 239 GKTVLIMELINNVAKAHGGFSVFAGV 264
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 175 bits (426), Expect = 2e-44
Identities = 85/127 (66%), Positives = 102/127 (80%), Gaps = 2/127 (1%)
Frame = +2
Query: 212 DVQFEDN--LPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSG 385
DV+FED LPPI+ +LEVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G
Sbjct: 95 DVRFEDQEGLPPIMTSLEVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTG 154
Query: 386 SPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKV 565
+PI +PVG TLGRI+NV+GEPIDERG I T+ IH +AP VD++ QEIL TGIKV
Sbjct: 155 APITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPALVDLATGQEILATGIKV 214
Query: 566 VDLLAPY 586
VDLLAPY
Sbjct: 215 VDLLAPY 221
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/26 (88%), Positives = 25/26 (96%)
Frame = +1
Query: 628 GQTVLIWELINNVAKAHGGYSVFAGV 705
G+TVLI ELINNVAKAHGG+SVFAGV
Sbjct: 236 GKTVLIMELINNVAKAHGGFSVFAGV 261
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 58.0 bits (134), Expect = 6e-09
Identities = 28/97 (28%), Positives = 48/97 (49%)
Frame = +2
Query: 293 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 472
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 473 PTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 583
+ + +AP ++ E + TG+K VD L P
Sbjct: 394 SDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVP 430
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 484
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 485 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 577
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 484
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI +
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 122
Query: 485 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 577
I + + + +E++ TGI +D++
Sbjct: 123 YLDISGSSINPSERTYPEEMIQTGISTIDVM 153
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 484
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 485 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 577
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 484
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 485 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 577
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 308 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDK 484
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI +
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA 121
Query: 485 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLL 577
I + + + +E++ TGI +D++
Sbjct: 122 YLDISGSSINPSERTYPEEMIQTGISTIDVM 152
>At5g18670.1 68418.m02216 beta-amylase, putative (BMY3) /
1,4-alpha-D-glucan maltohydrolase, putative almost
identical to beta-amylase BMY3 GI:15149457 from
[Arabidopsis thaliana]; identical to cDNA putative
beta-amylase BMY3 (BMY3) GI:15149456
Length = 536
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -1
Query: 613 KQPNLSSF----GIRSEQIDDFYTSYENLLLHRHVDKLWSFSMNSSSLVG 476
+QPN SSF G Q DF+ S+ + LL H D++ S + ++ S +G
Sbjct: 309 QQPNSSSFFSDGGSWESQYGDFFLSWYSSLLTSHADRVLSVASSAFSGIG 358
>At3g54040.1 68416.m05975 photoassimilate-responsive protein-related
contains weak similarity to mRNA inducible by sucrose
and salicylic acid expressed in sugar-accumulating
tobacco plants (GI:871487) [Nicotiana tabacum]
Length = 183
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 227 DNLPPILNALEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLV 358
+NLP + + + R +LE A GE T RT A+D EG+V
Sbjct: 29 ENLPTNMCSFSISASGKRCILETANVAGEFTCRTSAVD-VEGIV 71
>At2g33860.1 68415.m04157 auxin-responsive factor (ARF3) / ETTIN
protein (ETT) identical to ETTIN GB:AF007788 from
[Arabidopsis thaliana]
Length = 608
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 317 CSHPNVGLPQVRGGEIDFAPQGHLESEAGY-LRIAHLPQH 201
C+ P + LP+ RG + + PQGHLE + I LP H
Sbjct: 59 CAGPLISLPK-RGSLVLYFPQGHLEQAPDFSAAIYGLPPH 97
>At5g42930.1 68418.m05234 lipase class 3 family protein low
similarity to Triacylglycerol Acylhydrolase
(E.C.3.1.1.3) [Rhizomucor miehei] GI:230348; contains
Pfam profile PF01764: Lipase
Length = 237
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 622 WCGQTVLIWELINNVAKAHGGYSVFAGV 705
WC L W + NV K HGG+ G+
Sbjct: 57 WCTDLDLSWYEVKNVGKIHGGFMKALGL 84
>At1g56630.1 68414.m06513 lipase class 3 family protein contains
Pfam profile PF01764: Lipase
Length = 364
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 622 WCGQTVLIWELINNVAKAHGGYSVFAGV 705
WC L W + NV K HGG+ G+
Sbjct: 139 WCTDLDLSWHNVMNVGKIHGGFMKALGL 166
>At1g74250.1 68414.m08599 DNAJ heat shock N-terminal
domain-containing protein contains Pfam domains PF00226:
DnaJ domain and PF00096: Zinc finger, C2H2 type
Length = 630
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 619 SAKQPNLSSFGIRSEQI-DDFYTSYENLLLHRHVDKLWSFSMNSSSLVGGDGTALVNRFA 443
S K+ + GI E D+ +SY L L RH DKL + S + LV+ +
Sbjct: 7 SEKRCHYEVLGISKESSPDEIRSSYRRLALQRHPDKLMKAAGLSEAEATAQFQELVHAY- 65
Query: 442 DYIDDASE--GFSSHR 401
+ + D E + SHR
Sbjct: 66 EVLSDPKERAWYDSHR 81
>At1g69410.1 68414.m07972 eukaryotic translation initiation factor
5A, putative / eIF-5A, putative strong similarity to
eukaryotic initiation factor 5A (2) (Nicotiana
plumbaginifolia) GI:19702, SP|Q9AXQ6| Eukaryotic
translation initiation factor 5A-1 (eIF-5A 1)
{Lycopersicon esculentum}
Length = 158
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = -1
Query: 457 VNRFADY--IDDASEGFSSHRDTNG*ARVEYRLPTD*AFSTVHGNG 326
VNR DY ID + +GF S NG + + +LPTD A T NG
Sbjct: 85 VNR-VDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDEALLTQLKNG 129
>At1g45201.2 68414.m05185 lipase class 3 family protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 479
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 622 WCGQTVLIWELINNVAKAHGGYSVFAGV 705
WC L W + NV K H G+S G+
Sbjct: 220 WCTDLDLSWYEMKNVGKVHAGFSRALGL 247
>At3g62640.1 68416.m07036 expressed protein
Length = 110
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = -2
Query: 417 VSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATSSTRRGDRFCTSRAFRIG 238
V T + P+S P P S + RT +P + T+R R T + + +
Sbjct: 27 VGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKRIATYKTYALE 86
Query: 237 GRLSS 223
G++ S
Sbjct: 87 GKVKS 91
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 317 CSHPNVGLPQVRGGEIDFAPQGHLESEA 234
C+ P LP+ +G + + PQGHLE +A
Sbjct: 70 CAGPLTCLPK-KGNVVVYFPQGHLEQDA 96
>At4g02485.1 68417.m00337 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171, 2OG-Fe(II)
oxygenase superfamily
Length = 226
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -3
Query: 662 LLISSHINTVWPHQLRQTTQSFLLWHKERAD--RRLLYQLRE 543
+L+S W H++ + F LW E D RR+ LR+
Sbjct: 181 ILMSGEARYRWKHEINRKQNGFQLWEGEEIDQKRRISITLRK 222
>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
sapiens]
Length = 676
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 571 IDDFYTSYENLLLHRHVDKLWSFSMNSSSLV 479
++DF T++ N H H+D L ++NSSS+V
Sbjct: 421 LEDFDTNFVNKFYHSHLDDL--SNINSSSVV 449
>At1g28380.1 68414.m03487 expressed protein
Length = 612
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -2
Query: 552 VTRISCCTDMSTN---SGASA*IAAVLSVGMGPRSSIGSP 442
VTR SC ++STN SG + I+ LS G+ P + P
Sbjct: 498 VTRKSCWDNLSTNSRKSGVFSMISTRLSTGLSPNPATTKP 537
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,204,174
Number of Sequences: 28952
Number of extensions: 346551
Number of successful extensions: 973
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -