Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30281
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 107 9e-24
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 0.92
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 29 3.7
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 29 3.7
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 29 3.7
Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical pr... 28 6.5
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 28 6.5
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 6.5
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 6.5
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 107 bits (256), Expect = 9e-24
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
Frame = +3
Query: 18 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 197
D+LF ++N F++G+YQ I EA S ++D +LYRSYIAQG I +E+ A
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62
Query: 198 DPM--LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEA 371
L ++ ++ A K I+A++ VA + +EI ++AATI D +
Sbjct: 63 TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQD 121
Query: 372 ALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG 551
A + + E LE RA + L+ MN+ LA ++K + I++D TL+QLA A +
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181
Query: 552 PGIQDAHYSVMELSER 599
++DA Y E+S++
Sbjct: 182 GKVKDALYIYSEMSDK 197
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 0.92
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 354 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 449
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 162 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 332
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 333 AATIYYHEDNYEAALKILHNAESLEL 410
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 162 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 332
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 333 AATIYYHEDNYEAALKILHNAESLEL 410
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +3
Query: 162 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 332
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469
Query: 333 AATIYYHEDNYEAALKILHNAESLEL 410
A +Y +E YE+ALKIL + + ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495
>Z70751-1|CAA94751.1| 544|Caenorhabditis elegans Hypothetical
protein F11A3.1 protein.
Length = 544
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -3
Query: 630 GRPDQVPMNRDVQIAPSRCSVHLGYQGRPELDSATLV 520
G + P+N+ +I ++ LGY GRPE ++T++
Sbjct: 380 GTDREQPVNQRGEICVRGPTIMLGYLGRPEATASTVI 416
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 303 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 467
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 303 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 467
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = +3
Query: 144 SYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIF 323
+YI + YR + E T P +Q LK V++ K ++ V GT +
Sbjct: 1184 AYIRENGYRSILSEKFTLTPGVQALKLRVEH----KTKPTFYYNLGVEVRPGTGRYKDTQ 1239
Query: 324 LIVAATIYYHEDNYEAALKILHN 392
+++ + + ++ AL + H+
Sbjct: 1240 VVLLTSRFLLQNQSTVALSVCHH 1262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,520,722
Number of Sequences: 27780
Number of extensions: 306555
Number of successful extensions: 767
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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