Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30281
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30630.1 68414.m03746 coatomer protein epsilon subunit family...   150   7e-37
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family...   148   4e-36
At5g54540.1 68418.m06790 expressed protein                             30   1.1  
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa...    30   1.5  
At2g29840.1 68415.m03624 zinc finger (C3HC4-type RING finger) fa...    29   2.0  
At5g28530.1 68418.m03478 far-red impaired responsive protein, pu...    29   2.6  
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ...    27   7.9  
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ...    27   7.9  
At3g29075.1 68416.m03637 glycine-rich protein                          27   7.9  
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ...    27   7.9  
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ...    27   7.9  

>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
           gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
           gb|T21160, gb|T14119 and AI100483 come from this gene
          Length = 292

 Score =  150 bits (364), Expect = 7e-37
 Identities = 77/195 (39%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
 Frame = +3

Query: 18  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 194
           D LF+++N FY+G YQ AIN ++  + S   + ++RD  ++R+YIA G+Y++V  E+ + 
Sbjct: 8   DHLFNLRNHFYLGAYQAAINNSEIPNLSQEDI-VERDCLVHRAYIALGSYQLVISEIDEA 66

Query: 195 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 374
           A   LQ +K L  YL    NK + ++ +   +A  T  +N I  ++A TI+ HE++Y  A
Sbjct: 67  AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126

Query: 375 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 554
           LK  H+  +++L A  +Q  + M+R D A KQL+++Q I++D TLTQLA AWLNL  GG 
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186

Query: 555 GIQDAHYSVMELSER 599
            IQ+A+    + SE+
Sbjct: 187 KIQEAYLIFQDFSEK 201


>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
           protein / COPE family protein similar to SP|O14579
           Coatomer epsilon subunit (Epsilon-coat protein)
           (Epsilon-COP) from Homo sapiens, SP|Q60445 from
           Cricetulus griseus
          Length = 293

 Score =  148 bits (358), Expect = 4e-36
 Identities = 75/195 (38%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
 Frame = +3

Query: 18  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 194
           D LF+++N FY+G YQ AIN ++ ++  +P  A++RD  ++RSYIA G+Y++V  E+ ++
Sbjct: 9   DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67

Query: 195 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 374
           A   LQ +K L  YL    NK + ++ +   +A  T  +N+   ++A  I+ HE++Y   
Sbjct: 68  AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127

Query: 375 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 554
           LK  H   +++L A  +Q  + M+R + A KQL+++Q I++D TLTQLA AWLNL  GG 
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187

Query: 555 GIQDAHYSVMELSER 599
            IQ+A+    + SE+
Sbjct: 188 KIQEAYLIFEDFSEK 202


>At5g54540.1 68418.m06790 expressed protein
          Length = 297

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/70 (28%), Positives = 38/70 (54%)
 Frame = +3

Query: 75  NEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDAN 254
           +E ++V  + P VALQ  AFL  +  AQ     +  + K  D +++  K L+ +L    N
Sbjct: 142 SENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDPKVWDAVMEN-KDLMKFL--QTN 198

Query: 255 KSAIVADIDA 284
           K+A+ + +++
Sbjct: 199 KTAVSSQVES 208


>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
          Length = 531

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 54  GNYQQAINEAQSVSP-STPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLV 230
           GN +   N +   SP  TP   L  DAF  R  +  G   +   ++     +L+PL+ L 
Sbjct: 322 GNIKSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLS 381

Query: 231 D 233
           D
Sbjct: 382 D 382


>At2g29840.1 68415.m03624 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 310

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -3

Query: 390 YEGFLMQLHNYLHDSKLLQPQSRIFHWTAPYL*PLEHQYQRQWQIYWHQVV 238
           Y G+    + +   S   QPQ  +FHW   Y    +HQ +  +   + QV+
Sbjct: 170 YLGYEQDPNVFYGQSSPYQPQEVLFHWLPRYEHDFDHQTEEAFHPQFEQVL 220


>At5g28530.1 68418.m03478 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family
          Length = 685

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 461 CKVWSIHSQ*ALECECS*FQRFSIMKDF*CSFIIIFMIVNCCSH-NQEYFIGQLRTFSHS 285
           C +W+  ++  ++C C  F+   I+    C   +  + V  C H  ++YF+ + R  S  
Sbjct: 568 CVIWNPENE-EIQCSCKEFEHSGIL----CRHTLRVLTVKNCFHIPEQYFLLRWRQESPH 622

Query: 284 SINISDNGRFIG 249
               + NG+ IG
Sbjct: 623 VATENQNGQGIG 634


>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1072

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 150 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 320
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698


>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1069

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 150 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 320
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +3

Query: 12  DVDELFDVKNAFYVGNYQQAINEAQSVSPST----PLVALQRDAFLYR 143
           DVD+  +     Y G Y   +   +S+ PS     PL +L  DAF Y+
Sbjct: 10  DVDDFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLSSLSGDAFEYQ 57


>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
           DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00249: Myb-like DNA-binding domain
          Length = 1055

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = +3

Query: 150 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 320
           I QG  R+ +Q+    D +LQ ++   + +    + +    DID  +AKG E + E+
Sbjct: 639 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 693


>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
           contains Pfam domain PF02141: DENN (AEX-3) domain
          Length = 976

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +3

Query: 417 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 560
           F+ +C ++ +      +Q+K++  + DD TL  +      ++Q  PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,545,607
Number of Sequences: 28952
Number of extensions: 273312
Number of successful extensions: 632
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)