Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30280
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0066 - 12026714-12027211,12027783-12028103 32 0.43
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 29 2.3
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 29 2.3
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 28 5.3
08_02_1627 - 28348225-28348725,28349061-28349114,28352613-283528... 28 5.3
11_06_0087 - 19919224-19922304 28 7.0
09_02_0181 - 5425833-5426527,5426667-5429397 27 9.2
08_02_0807 + 21411799-21412665 27 9.2
01_05_0489 + 22652479-22653718,22653882-22654063,22654172-226542... 27 9.2
>09_03_0066 - 12026714-12027211,12027783-12028103
Length = 272
Score = 31.9 bits (69), Expect = 0.43
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Frame = +3
Query: 198 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDN--DDDVQYAITT--IKR 365
HAVT L GG G + + D+ G EV I N DD+VQYAIT +
Sbjct: 42 HAVTKLVVGGGGVDSARNITDVDG--GDICHREVHSITEEDGNVDDDEVQYAITNEGVGA 99
Query: 366 NGVGLKGNIETKSEAAYVTS 425
+ G G + + SE Y S
Sbjct: 100 DDDGSDGKLSSASEVLYAAS 119
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 216 PGGGIGPE-CMGYVRDIFKYIGAPID 290
P G+G E CM V D F+Y+ AP++
Sbjct: 302 PQHGVGAEICMSVVEDSFEYLDAPVE 327
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -3
Query: 388 LPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP-MYLNMSRTYPMHSGPIPPP 218
L SP P L V+ SSS + + S+ S S AP + S SGP PPP
Sbjct: 14 LTLSPIPTALRVLSTASASSSSASAAASSSDSDSAAAPDADFDSSEFALPPSGPTPPP 71
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 216 PGGGIGPE-CMGYVRDIFKYIGAPID 290
P GIG E CM V + F+Y+ AP++
Sbjct: 307 PQHGIGAEICMSVVEESFEYLDAPVE 332
>08_02_1627 -
28348225-28348725,28349061-28349114,28352613-28352810,
28352856-28353380
Length = 425
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 352 VIAYWTSSSLSIVGSMSTTSKSIGAPMY 269
+ YWT+SS +G+ + S+G P Y
Sbjct: 254 LFTYWTTSSRIAIGASISPVSSVGGPQY 281
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 322 SIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPP 218
++VG++S S+ +L++SR Y S P PPP
Sbjct: 104 ALVGAISPALLSLRRLRHLDLSRNYLQGSPPGPPP 138
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 282 PIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKG 386
P+ + D MDND++++ A+ IK + VG+ G
Sbjct: 140 PVQKIPIPCDHVMDNDNNLREALDYIKNDPVGIIG 174
>08_02_0807 + 21411799-21412665
Length = 288
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 435 ALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLE 569
A+R+E+D Y Y+ +PG+ R V R E YA LE
Sbjct: 32 AIRDEVDRYPYVAMDTEFPGIVCR----PVGNFRTTDEFNYANLE 72
>01_05_0489 +
22652479-22653718,22653882-22654063,22654172-22654279,
22654364-22654467,22654570-22654657,22654760-22654870,
22654955-22655020,22656740-22656799,22656869-22657411,
22657646-22657765,22657845-22657964,22659083-22659136,
22659236-22659331,22660580-22660681
Length = 997
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 505 GIRTLMLLLSDRTQKVN 555
GI L+LLLSDR QK+N
Sbjct: 548 GISDLLLLLSDRAQKMN 564
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,379,479
Number of Sequences: 37544
Number of extensions: 412090
Number of successful extensions: 1152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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