Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30280
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   8e-13
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 29/50 (58%), Positives = 40/50 (80%)
 Frame = +3

Query: 441 RNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVEWV 590
           + ELD++A +++C+S PG+ TRH +ID+VIIR+ TEGEY  LEHESV  V
Sbjct: 89  KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGV 138



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 180 AQYGGRHAVTMLPGGGIGPECMGYVRDIFK 269
           A +GGRH VT++PG G+GPE +  V+ +FK
Sbjct: 60  APFGGRHTVTLIPGDGVGPELVNCVKQMFK 89


>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/65 (27%), Positives = 25/65 (38%)
 Frame = -3

Query: 367 FLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPP 188
           F+L+VV   +         S      + G P +   +  YP      PPPGS V    PP
Sbjct: 98  FVLLVVSMCYCKHCQKANRSPGHVGGTAGTPSFATTTINYPPPGPQAPPPGSTVHY-PPP 156

Query: 187 YCALG 173
              +G
Sbjct: 157 QTTMG 161


>SB_38115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 171 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFE--VVDIDPTMDNDDDVQY 344
           I +  YG R    + P G I P C G +  IF    AP++ +  VVDI  ++   D V  
Sbjct: 296 IQQENYGCRVLDCLNPSGEIPPGCTGLIHWIF----APLEAKTYVVDIPVSIIGGDSVLV 351

Query: 345 AITTI 359
             T +
Sbjct: 352 TFTGV 356


>SB_32303| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 979

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
 Frame = -3

Query: 583 STDSCSNIA-----YSPSVF-CLIITTSMSLCLVATPG 488
           ST SCS I      Y  ++  C ++ TS  LC+ A PG
Sbjct: 659 STHSCSKITIIDANYPQNILDCFVVCTSHLLCITAVPG 696


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 321  DNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRN---ELDMYAYILNCKSYP 491
            ++  D   +IT  KRN V  KGN   K  A  +  ++VA      E+DM A+++N +S  
Sbjct: 6095 ESSKDELESITGDKRNIVTDKGNKPPKDIADNIAKKSVAEMKPVPEVDM-AFVINARSTN 6153

Query: 492  GVATRHKDIDVV 527
              +   K  D V
Sbjct: 6154 SASNFEKMKDTV 6165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,204,735
Number of Sequences: 59808
Number of extensions: 479378
Number of successful extensions: 1232
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)