Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30280
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 164 4e-41
AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical ... 158 3e-39
Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical pr... 100 1e-21
Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical pr... 99 2e-21
AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine r... 32 0.29
Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 30 1.2
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 30 1.2
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 30 1.2
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 30 1.2
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 30 1.2
AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine r... 30 1.6
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 2.1
Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical pr... 28 4.8
M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 28 4.8
AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical ... 28 6.3
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 164 bits (399), Expect = 4e-41
Identities = 84/171 (49%), Positives = 116/171 (67%), Gaps = 1/171 (0%)
Frame = +3
Query: 72 VRGSVNLSSKAAPATLSDFDV-QHKTPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMG 248
+R S N+ KA AT + D+ + ++PV++ A+YGGRH VT+LPG GIGPE +
Sbjct: 10 LRSSKNVVQKAFVATSPNSDMLRFRSPVLQTNTT-KLARYGGRHNVTVLPGDGIGPEMLH 68
Query: 249 YVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSR 428
+V I + AP+DFEVV++ D +D+ AIT IKRNGV LKGNIETK + SR
Sbjct: 69 HVERILSAVQAPVDFEVVNLTSKEDASEDLAEAITAIKRNGVALKGNIETKFDNPSFVSR 128
Query: 429 NVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESV 581
N+ LR +L++YA +L+C + P V +RH ID+VIIR+NTEGEY+ EHE+V
Sbjct: 129 NLELRRQLNLYANVLHCSTIPTVPSRHTGIDMVIIRENTEGEYSGNEHEAV 179
>AC006610-5|AAK85453.1| 373|Caenorhabditis elegans Hypothetical
protein C30F12.7 protein.
Length = 373
Score = 158 bits (384), Expect = 3e-39
Identities = 74/143 (51%), Positives = 101/143 (70%)
Frame = +3
Query: 171 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAI 350
+P A+YGGRH V LPG GIGPE + ++R+IF + AP++FE V + ++ D D+ A+
Sbjct: 27 LPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSFCHAPVNFEEVQVSSSL-LDGDMDAAM 85
Query: 351 TTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVI 530
I+RNGV +KGNIETK + SRNV LR +LD+YA IL+C + P V TRH ID+V+
Sbjct: 86 LAIERNGVAIKGNIETKHDDPQFNSRNVELRTKLDLYANILHCVTIPTVPTRHSGIDIVL 145
Query: 531 IRQNTEGEYAMLEHESVEWVWSS 599
IR+NTEGEY+ LEHE+V + S
Sbjct: 146 IRENTEGEYSGLEHEAVPGIVES 168
>Z79755-1|CAB02111.2| 358|Caenorhabditis elegans Hypothetical
protein F43G9.1 protein.
Length = 358
Score = 100 bits (239), Expect = 1e-21
Identities = 57/140 (40%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Frame = +3
Query: 189 GGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQY---AITTI 359
G VT++PG GIGPE V+ IF+ API ++ VD+ P D + I +
Sbjct: 22 GDVRRVTLIPGDGIGPEISASVQKIFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELM 81
Query: 360 KRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQ 539
N VGLKG +ET + S N+A+R E +YA + C+S G T + ++DVV IR+
Sbjct: 82 HANKVGLKGPLETPIGKGH-RSLNLAVRKEFSLYANVRPCRSLEGHKTLYDNVDVVTIRE 140
Query: 540 NTEGEYAMLEHESVEWVWSS 599
NTEGEY+ +EHE V V S
Sbjct: 141 NTEGEYSGIEHEIVPGVVQS 160
>Z81046-1|CAB02822.1| 379|Caenorhabditis elegans Hypothetical
protein C37E2.1 protein.
Length = 379
Score = 99.1 bits (236), Expect = 2e-21
Identities = 55/145 (37%), Positives = 83/145 (57%), Gaps = 6/145 (4%)
Frame = +3
Query: 174 PKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPT-MDNDDDVQYAI 350
P + + VT++PG G+GPE + V+DI K G PI+FE + + ++ A+
Sbjct: 35 PPTELNQKLKVTIIPGDGVGPELIYTVQDIVKQTGIPIEFEEIFLSEVHYTRSSSIENAV 94
Query: 351 TTIKR-NGVGLKGNIETKS---EAAYVTSRNVALRNELDMYAYILNCKSYPGVATRH-KD 515
+I R N V LKG IE + + N+ LR LD++A +++ K+ G+ TRH K
Sbjct: 95 ESIGRNNNVALKGAIEESAVLHTEGELQGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQ 154
Query: 516 IDVVIIRQNTEGEYAMLEHESVEWV 590
+D VI+R+ TEGEY+ LEHE V V
Sbjct: 155 LDFVIVREQTEGEYSSLEHELVPGV 179
>AF016443-13|AAC24275.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein190 protein.
Length = 333
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 234 PECMGYVRDIFKYIGAPIDFEVVDI 308
PE GY IFKY AP+++ VV++
Sbjct: 79 PELAGYPLGIFKYFNAPVEYYVVEV 103
>Z81474-5|CAB03906.1| 361|Caenorhabditis elegans Hypothetical
protein C18D4.9 protein.
Length = 361
Score = 30.7 bits (66), Expect = 0.89
Identities = 27/122 (22%), Positives = 47/122 (38%)
Frame = -3
Query: 367 FLLMVVIAYWTSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPP 188
FL+M V+ S + I M T + + + ++ Y + MV RP
Sbjct: 218 FLIMNVLISLLSPIIYIPIMMKTRENRMYSQQHAHL-HNYVFWQSILVVSSKMVIKIRPK 276
Query: 187 YCALGISFCFLITGVLCWTSKSDNVAGAAFELRFTDPRTSGKTFNLVNKRTAILNFELKT 8
C + F + ++ T ++G + FT P ++ N+ NF+LKT
Sbjct: 277 LCLVTFCFKIALPYIIRNTKIQHIISGISINDGFTTPLIIQLSYLWCNRHILFKNFKLKT 336
Query: 7 AV 2
V
Sbjct: 337 FV 338
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 429 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 536
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 429 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 536
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 209
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 388
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 429 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 536
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 174 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 208
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 387
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 429 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 536
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 173 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 207
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear receptor
NHR-70 protein.
Length = 383
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 429 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVIIR 536
N+ E D+ A +ILN SYPG A HKD +++ R
Sbjct: 169 NIVSSKECDLVADWILN--SYPGFADLHKDQKIILFR 203
>AF068709-14|AAC19258.2| 312|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 61 protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 178 LGISFCFLITGVLCWT 131
+ +++CFL G+LCWT
Sbjct: 228 IALTYCFLYAGILCWT 243
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 2.1
Identities = 28/85 (32%), Positives = 39/85 (45%)
Frame = -3
Query: 454 SSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGAP 275
SS+ + T+ T S L L SPTP +V++ +S S S V + + T + G P
Sbjct: 434 SSTIVSTTITPSTPKVSTLT--LSQSPTPTSTPLVVSSSSSGSSSTVVTSTITPSTQGVP 491
Query: 274 MYLNMSRTYPMHSGPIPPPGSMVTA 200
+ T P S P P S VTA
Sbjct: 492 TSTSNQPT-PSTSNPTTPK-STVTA 514
>Z74033-9|CAN99687.1| 228|Caenorhabditis elegans Hypothetical
protein F38B7.2b protein.
Length = 228
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -3
Query: 457 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 278
M S F R + F P FLL+ + +W + + M +
Sbjct: 119 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 177
Query: 277 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 185
+ M T P H P PP + +A PPY
Sbjct: 178 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 205
>Z74033-8|CAA98470.1| 218|Caenorhabditis elegans Hypothetical
protein F38B7.2a protein.
Length = 218
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/91 (24%), Positives = 32/91 (35%)
Frame = -3
Query: 457 MSSSFLRATLRDVT*AASLLVSMLPFSPTPFLLMVVIAYWTSSSLSIVGSMSTTSKSIGA 278
M S F R + F P FLL+ + +W + + M +
Sbjct: 109 MKSLFYRCHFAQTCMGLECKIDSRLFVPPIFLLIFISIFWCFKRM-LRRDMKRVERQTSF 167
Query: 277 PMYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 185
+ M T P H P PP + +A PPY
Sbjct: 168 HI---MDPTNPAHRSPPPPYNAQNSAIPPPY 195
>M77697-4|AAA27900.4| 493|Caenorhabditis elegans Hypothetical
protein B0303.7 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -3
Query: 328 SLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPI-PPPGSMVTA*RPPYCALGIS 167
++ I GS+ +++ S P Y + S + S P+ PPP T P Y A IS
Sbjct: 138 NMHIGGSVMSSNSSTATPSYQSNSTSSYSSSAPVAPPPVPRHTQSIPSYSAPAIS 192
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 198 HAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDVQ-YAITTIKR 365
H +L G G V+ + IG +D VV++ PT D+D+ +Q Y TTI R
Sbjct: 378 HNEPLLLVGETGVGKTSVVQAVADLIGVTLD--VVNVSPTSDSDELIQGYKPTTIGR 432
>AC024757-8|AAF59454.2| 215|Caenorhabditis elegans Hypothetical
protein Y37E11AL.2 protein.
Length = 215
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 368 VPLNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEYVANVSHALRTDTASREHGH 204
VP G + + + + W+N+H + RS VANV + +R HGH
Sbjct: 59 VPAVGSVLSVLLSLFTYEWLNLHFSSMTRSRRACFDVANVLETYQ--PRARTHGH 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,360,506
Number of Sequences: 27780
Number of extensions: 343233
Number of successful extensions: 993
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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