Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30280
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   1.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   1.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   1.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   7.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 312 PTMDNDDDVQYAITTIKRNGVGLKGNIETKSEA 410
           P  D D++ +  +  + RNG G+ G +    EA
Sbjct: 354 PKKDEDEEEEEEVVVVGRNGAGV-GAMNANGEA 385


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 519 DVVIIRQNTEGEYAMLEHESVE 584
           DV++IR+  EG   + E E ++
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIK 169


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 519 DVVIIRQNTEGEYAMLEHESVE 584
           DV++IR+  EG   + E E ++
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIK 180


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 519 DVVIIRQNTEGEYAMLEHESVE 584
           DV++IR+  EG   + E E ++
Sbjct: 159 DVIVIRRTGEGSKPLFEREEIK 180


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 519 DVVIIRQNTEGEYAMLEHESVE 584
           DV++IR+  EG   + E E ++
Sbjct: 148 DVIVIRRTGEGSKPLFEREEIK 169


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 429 NVALRNELDM-YAYILNCKSY 488
           + +L N+ +  ++Y+LNCK+Y
Sbjct: 18  SASLENDNEFGFSYLLNCKNY 38


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 372 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 503
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 372 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 503
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 586 HSTDSCSNIAYSPSVFCLIITTSMSLCLVAT 494
           HS  S       PSV C++  +   LC+  T
Sbjct: 123 HSVTSVGIDLEMPSVECIVFNSGTILCVPFT 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,222
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)