Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30280
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 115 3e-26
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 114 4e-26
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 111 3e-25
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 111 3e-25
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 100 9e-22
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 91 4e-19
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 61 5e-10
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 33 0.12
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 31 0.47
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 31 0.83
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 30 1.4
At2g27280.1 68415.m03278 hypothetical protein 30 1.4
At2g05420.1 68415.m00570 meprin and TRAF homology domain-contain... 30 1.4
At1g17080.1 68414.m02079 expressed protein 30 1.4
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A... 29 1.9
At1g48500.1 68414.m05421 expressed protein ; expression supporte... 29 1.9
At1g25450.1 68414.m03160 very-long-chain fatty acid condensing e... 29 1.9
At1g21540.1 68414.m02694 AMP-binding protein, putative strong si... 29 2.5
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 5.8
At4g18620.1 68417.m02757 hypothetical protein various predicted ... 28 5.8
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein... 28 5.8
At4g23080.1 68417.m03327 expressed protein predicted protein, Ar... 27 7.7
At3g60030.1 68416.m06704 squamosa promoter-binding protein-like ... 27 7.7
At3g56670.1 68416.m06303 hypothetical protein hypothetical prote... 27 7.7
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 7.7
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 7.7
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 115 bits (276), Expect = 3e-26
Identities = 62/148 (41%), Positives = 89/148 (60%)
Frame = +3
Query: 156 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 335
R +P+ G AVT++PG GIGP V + + + API FE D+ M
Sbjct: 24 RSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPIFFEKYDVHGEMSRVPP 83
Query: 336 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKD 515
+ +I++N V LKG ++T V+S NV LR ELD++A ++NC + PG+ TRH++
Sbjct: 84 E--VMESIRKNKVCLKGGLKTPVGGG-VSSLNVQLRKELDLFASLVNCFNLPGLPTRHEN 140
Query: 516 IDVVIIRQNTEGEYAMLEHESVEWVWSS 599
+D+V+IR+NTEGEYA LEHE V V S
Sbjct: 141 VDIVVIRENTEGEYAGLEHEVVPGVVES 168
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 114 bits (275), Expect = 4e-26
Identities = 61/152 (40%), Positives = 91/152 (59%)
Frame = +3
Query: 144 TPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMD 323
T + R +P+ G VT++PG GIGP G V + + + AP+ FE ++ M
Sbjct: 21 TSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVMEAMHAPVHFERYEVLGNMR 80
Query: 324 NDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 503
+ I ++KRN V LKG + T V+S N+ LR ELD++A ++NC + PG+ T
Sbjct: 81 KVPEE--VIESVKRNKVCLKGGLATPVGGG-VSSLNMQLRKELDIFASLVNCINVPGLVT 137
Query: 504 RHKDIDVVIIRQNTEGEYAMLEHESVEWVWSS 599
RH+++D+V+IR+NTEGEY+ LEHE V V S
Sbjct: 138 RHENVDIVVIRENTEGEYSGLEHEVVPGVVES 169
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 111 bits (268), Expect = 3e-25
Identities = 59/148 (39%), Positives = 92/148 (62%)
Frame = +3
Query: 156 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 335
R +P+ G VT++PG G+GP V+ + + + AP+ FE ++ M + +
Sbjct: 24 RSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLPE 83
Query: 336 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKD 515
+ +IK+N V LKG ++T V+S NV LR ELD++A ++NC + PG+A+RH++
Sbjct: 84 G--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLRKELDLFASLVNCFNLPGLASRHEN 140
Query: 516 IDVVIIRQNTEGEYAMLEHESVEWVWSS 599
+D+V+IR+NTEGEYA LEHE V V S
Sbjct: 141 VDIVVIRENTEGEYAGLEHEVVPGVVES 168
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 111 bits (268), Expect = 3e-25
Identities = 59/148 (39%), Positives = 92/148 (62%)
Frame = +3
Query: 156 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDD 335
R +P+ G VT++PG G+GP V+ + + + AP+ FE ++ M + +
Sbjct: 24 RSVTYMPRPGDGKPRPVTLIPGDGVGPLVTNAVQQVMEAMHAPVYFEPFEVHGDMKSLPE 83
Query: 336 VQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKD 515
+ +IK+N V LKG ++T V+S NV LR ELD++A ++NC + PG+A+RH++
Sbjct: 84 G--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLRKELDLFASLVNCFNLPGLASRHEN 140
Query: 516 IDVVIIRQNTEGEYAMLEHESVEWVWSS 599
+D+V+IR+NTEGEYA LEHE V V S
Sbjct: 141 VDIVVIRENTEGEYAGLEHEVVPGVVES 168
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 100 bits (239), Expect = 9e-22
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Frame = +3
Query: 207 TMLPGGGIGPECMGYVRDIFKYIGAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGV 374
T+ PG GIGPE V+ +F G PI++E +IDP + + ++ +++RN V
Sbjct: 47 TLFPGDGIGPEIAESVKKVFTTAGVPIEWEEHYVGTEIDPRTQSFLTWE-SLESVRRNKV 105
Query: 375 GLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGE 554
GLKG + T + S N+ LR EL++YA + C S PG TR+ D+D++ IR+NTEGE
Sbjct: 106 GLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGE 164
Query: 555 YAMLEHESVEWVWSS 599
Y+ LEH+ V V S
Sbjct: 165 YSGLEHQVVRGVVES 179
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 91.5 bits (217), Expect = 4e-19
Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 4/135 (2%)
Frame = +3
Query: 207 TMLPGGGIGPECMGYVRDIFKYIGAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGV 374
T+ PG GIGPE V+ +F ID++ ++DP N + ++ +N V
Sbjct: 47 TLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRT-NSFLTWDNLQSVLKNKV 105
Query: 375 GLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGE 554
GLKG + T + S N+ LR EL++YA + C S PG TR+ D+D++ IR+NTEGE
Sbjct: 106 GLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGE 164
Query: 555 YAMLEHESVEWVWSS 599
Y+ LEH+ V+ V S
Sbjct: 165 YSGLEHQVVKGVVES 179
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 61.3 bits (142), Expect = 5e-10
Identities = 39/116 (33%), Positives = 61/116 (52%)
Frame = +3
Query: 252 VRDIFKYIGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRN 431
V + + AP+ FE I N + + +I++N V L G + S
Sbjct: 16 VHQVMDAMQAPVYFETYIIKGKNMNHLTWE-VVDSIRKNKVCLNGRVNN--------SLC 66
Query: 432 VALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGEYAMLEHESVEWVWSS 599
R ELD++A +++C + G +RH+++D+V+IR+NTEGEYA EHE V V S
Sbjct: 67 GGARKELDLFASLVDCFNLNGQPSRHENVDIVVIRENTEGEYAGREHEVVPGVIES 122
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 33.5 bits (73), Expect = 0.12
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 87 NLSSKAAPATLSDFDVQHKTPV-IRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDI 263
N+ + PAT Q P +R P + R+ +T+LPG GIGPE + +++
Sbjct: 8 NIRTVKVPATFRAVSKQSLAPFRVRCAVASPGKK---RYTITLLPGDGIGPEVVSIAKNV 64
Query: 264 FKYIGA 281
+ G+
Sbjct: 65 LQQAGS 70
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 31.5 bits (68), Expect = 0.47
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 195 RHAVTMLPGGGIGPECMGYVRDIFKYIG 278
R+ +T+LPG GIGPE + +++ + G
Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQKAG 70
>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
enzyme, putative similar to isoamylase from [Solanum
tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
[Hordeum vulgare] GI:21314275, [Oryza sativa]
GI:3252794; contains Pfam profiles PF00128: Alpha
amylase catalytic domain, PF02922: Isoamylase N-terminal
domain
Length = 783
Score = 30.7 bits (66), Expect = 0.83
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 129 DVQHKTPVIRKQKLIPKA-QYGGRHAVTMLPGGGIGPECMGYVRDIFK 269
D+ P++R KLI +A GG + V M P GI E G RD+ +
Sbjct: 450 DMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVR 497
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 29.9 bits (64), Expect = 1.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 195 RHAVTMLPGGGIGPECMGYVRDIFKYIGA 281
R+ + +LPG GIGPE + +++ + G+
Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQKAGS 74
>At2g27280.1 68415.m03278 hypothetical protein
Length = 427
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 275 DVFEYVANVSHALRTDTASREHGHRVTTAVLRLR 174
+V +++ S+ LR DTA +E VTTA RLR
Sbjct: 26 NVLDFIGKESNFLRKDTAEKEITDAVTTAKERLR 59
>At2g05420.1 68415.m00570 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 297
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +3
Query: 378 LKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTE 548
LK + +A Y+ R N L +Y + N KS+P TRH + ++ Q +E
Sbjct: 39 LKAYPKGNEKATYLAYR----ANNLALYLNVANSKSFPIGWTRHTKFSLTLVNQKSE 91
>At1g17080.1 68414.m02079 expressed protein
Length = 154
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 283 GAPMYLNMSRTYPMHSGPIPPPGSMVTA*RPPYCALGISFCFLITG 146
GAP Y + +T P+H G G V R P C +G+ + I G
Sbjct: 57 GAPYYAHGYQTVPVHGG--VAEGRPVRQRRLPCCGIGLGWFLFIVG 100
>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845 contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 375
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 489 PGVATRHKDIDVVIIRQNTEGEYAMLEHESVEWVWSSQ*KWVT 617
PG+ T+H D ++ II+ G + +L S W W T
Sbjct: 251 PGLLTKHNDFELSIIKDKIYGHWWLLMGNSSSSTWKEIGFWPT 293
>At1g48500.1 68414.m05421 expressed protein ; expression supported
by MPSS
Length = 285
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -1
Query: 612 PTFIDSTTPIQRIRVPT*HIHLLCSV***QHQCPYAWSQRQGKIY---SSECKHTCPVHF 442
P F+ T Q RV T + HLL S Q+Q Y S ++ +++ S + + T V
Sbjct: 13 PQFLSFGTSQQETRVNTVNDHLLSSAAMDQNQRTYFSSLQEDRVFPGSSQQDQTTITVSM 72
Query: 441 *EPHYVMS 418
EP+Y+ S
Sbjct: 73 SEPNYINS 80
>At1g25450.1 68414.m03160 very-long-chain fatty acid condensing
enzyme, putative nearly identical to fatty acid
condensing enzyme CUT1 GI:5001734 from [Arabidopsis
thaliana]
Length = 492
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/71 (22%), Positives = 32/71 (45%)
Frame = +3
Query: 321 DNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVA 500
DN V++ + ++R+G+G + + T + RNE M + +
Sbjct: 115 DNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTG 174
Query: 501 TRHKDIDVVII 533
+ KDID++I+
Sbjct: 175 LKPKDIDILIV 185
>At1g21540.1 68414.m02694 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501; identical to cDNA adenosine monophosphate
binding protein 9 AMPBP9 (AMPBP9) GI:20799726
Length = 550
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 280 APMYLNMSRTYPMHSGPIPPPGSMVTA*RPPYCAL 176
APM LNM YP P+ P ++TA PP A+
Sbjct: 282 APMVLNMLTNYPSRK-PLKNPVQVMTAGAPPPAAI 315
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = -3
Query: 232 PIPPPGSMVTA*RPPYCAL-GISFCF 158
P+PPP + PP CAL GI CF
Sbjct: 99 PLPPPPLIFVGAPPPTCALKGIVCCF 124
>At4g18620.1 68417.m02757 hypothetical protein various predicted
proteins, Arabidopsis thaliana
Length = 164
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 219 GGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDV 338
GGG G E G VRD+ G P DF ++ +D++ V
Sbjct: 51 GGGKGGEGKGSVRDVTLVSGFPADFSTERLE-ELDDESHV 89
>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 303
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 471 ECKHTCPVHF*EPHYVMSHRLPHFWFQC 388
ECK+T HY H+ H WF+C
Sbjct: 143 ECKYTGVYTDLYRHYHAEHKTDHSWFKC 170
>At4g23080.1 68417.m03327 expressed protein predicted protein,
Arabidopsis thaliana
Length = 244
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 489 PGVATRHKDIDVVIIRQNTEGEYAMLEHESVEW 587
PG T H+D++ II+ G + +L + W
Sbjct: 107 PGRLTEHRDLNFAIIKDKDNGNWWLLMGTGILW 139
>At3g60030.1 68416.m06704 squamosa promoter-binding protein-like 12
(SPL12) identical to squamosa promoter binding
protein-like 12 [Arabidopsis thaliana] GI:6006395;
contains Pfam profiles PF03110: SBP domain, PF00023:
Ankyrin repeat
Length = 927
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 185 LRLRNQLLFPDNGSLVLDIEIR*CSGRCFRAEIHRPAHIRQNLQFS 48
LR++NQL F NG +VLD + S + RP + + QF+
Sbjct: 488 LRVQNQLAFAFNGQVVLDTSLPLRSHDYSQIITVRPLAVTKKAQFT 533
>At3g56670.1 68416.m06303 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 233
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 531 IRQNTEGEYAMLEHESVEWVWSS 599
+ +NT GE A+L +SV +WSS
Sbjct: 36 VTKNTPGEIALLRFKSVSKLWSS 58
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 385 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPMY---LNMSRTYPMHSGPIPPP 218
PF PTP + +A W SS S+ ++S ++GAP L RT P +S P
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPS 297
Query: 217 G 215
G
Sbjct: 298 G 298
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.5 bits (58), Expect = 7.7
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Frame = -3
Query: 385 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPMY---LNMSRTYPMHSGPIPPP 218
PF PTP + +A W SS S+ ++S ++GAP L RT P +S P
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPS 297
Query: 217 G 215
G
Sbjct: 298 G 298
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,966
Number of Sequences: 28952
Number of extensions: 316226
Number of successful extensions: 895
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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