Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30278
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.45 
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    28   0.78 
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.78 
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   1.8  
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy...    27   2.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   3.2  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    26   3.2  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   3.2  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   3.2  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   3.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   3.2  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.2  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    25   5.5  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    25   7.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   7.3  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   7.3  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    25   9.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 33   PAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHA-LPPPEYVGQHAPTEVEARRDS 209
            P    ++ S+   EP   H  S     PV+  P++  A +PP   +   AP       D+
Sbjct: 972  PLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADA 1031

Query: 210  PPRVVPS 230
            PP  VPS
Sbjct: 1032 PPIPVPS 1038


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   LFRLTFPFGPAASQSLTSAERVEPALAHLSSTGFPLP 116
           L +L  P  P+ S   TSA  V  AL+ +SST F  P
Sbjct: 262 LAQLEKPASPSTSSVATSAPSVPSALSSISSTPFMKP 298


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 81  LAHLSSTGFPLPVAQPPSS--WHALPPPEYVGQHAPTEV 191
           L  ++ST  P P A PP S  W A P    V   +P++V
Sbjct: 53  LIDMNSTVLPTPPASPPGSPYWEAKPVSHTVFLESPSDV 91


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 225 PSWGNFSVKSAIIYLFLYYLTR 290
           PSW  +S++S ++ L+LY + R
Sbjct: 50  PSWYKYSLESGLVCLYLYLIYR 71


>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 596

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 282 LTRGRSPGTALTTGHPPATHPITGHVTG 365
           L + R+PG    T  PP +  ITGH  G
Sbjct: 23  LEKRRTPGKPRATREPPISVVITGHSKG 50


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 327 PPATHPITGHVTGLGLGHFL 386
           PP T P TG   GL   HF+
Sbjct: 413 PPGTDPTTGETQGLVRSHFI 432



 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PPDFPFRASRLAVADERRARRASAG 85
           P DF  R +RLA  D R+A +A AG
Sbjct: 580 PTDFLARRTRLAFLDARQALQAVAG 604


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 24  PFGPAASQSLTSAERVEPALAHLSS--TGFPLPVAQPPSSWHALP 152
           P    +S SL+SA R    +  +S     FP+P   P + W  +P
Sbjct: 2   PLSTQSSDSLSSAGRQSFGVNSVSDFLAQFPIPTNLPSNKWQDIP 46


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 8/18 (44%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = +3

Query: 114  PVAQP-PSSWHALPPPEY 164
            P+A+P P++W+ +PPP +
Sbjct: 1132 PIAKPAPANWYPVPPPGF 1149


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
 Frame = +3

Query: 102 GFPLPVAQPPSSWH------ALPPPEYVGQHAPTEVEARRDSPPRVVPSWGNFSVKSAII 263
           G+PL  ++   SW       A P   Y  Q + T + A    P   +P    FS   A+ 
Sbjct: 360 GYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQFSPYPAVA 419

Query: 264 YLFLYYLTRGRSPGTALTTGHP 329
              L   TRG   G  ++ G P
Sbjct: 420 PSPLALQTRGAPIGMEISIGSP 441


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +3

Query: 84  AHLSS---TGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPR 218
           AH SS    G+P+    P S+  A PP + V    P+ V +   S  R
Sbjct: 162 AHYSSPYNNGYPIGAVNPTSAIPAQPPAQPVNNVLPSYVRSNSRSSAR 209


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 93  SSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPSWGNFSVKSAI 260
           SST  P P A+P SS     P  +    AP    A   +P   +P W   + +SA+
Sbjct: 418 SSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSAPALSMNPSS-LPPWQQPTQQSAV 472


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 24  PFGPAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPP 158
           P GP  S S  SA    PA +  S+   P P A    ++ A P P
Sbjct: 59  PSGPPPSYS-NSAAPATPAASASSAAPAPAPAASQNRAYGAAPQP 102


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 96  STGFPLPVAQPPSSWHA 146
           S GFP+P + P +S+HA
Sbjct: 313 SAGFPIPGSVPSTSYHA 329


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 223 TTLGGESLRASTSVGACCPTYSGGGKACH 137
           TTL  + +  ST  G+   + + GG  CH
Sbjct: 393 TTLQSDGVCVSTPTGSTAYSVAAGGSLCH 421


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 262 MMADLTEKLPQEGTTLGGESLRASTSVGACCPTY 161
           M A  T + P  GTT G  S   S+SV +  PT+
Sbjct: 627 MSAATTSRAPS-GTTSGTASSTTSSSVASATPTH 659


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 262 MMADLTEKLPQEGTTLGGESLRASTSVGACCPTY 161
           M A  T + P  GTT G  S   S+SV +  PT+
Sbjct: 627 MSAATTSRAPS-GTTSGTASSTTSSSVASATPTH 659


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 223 TTLGGESLRASTSVGACCPTYSGGGKACHDE 131
           TT+  + L  ST  G+   + + GG  CH +
Sbjct: 272 TTVKADGLCISTPTGSTAYSLAAGGSLCHPD 302


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 18/65 (27%), Positives = 29/65 (44%)
 Frame = +3

Query: 21  FPFGPAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEAR 200
           +PF PA +++  S   +EP    L S+  P+  A P  S + L            + +AR
Sbjct: 251 YPFVPANTRASHSPSLLEPYAHSLPSSVAPVG-AYPEKSSYLLSNSSNDSASRKEKPKAR 309

Query: 201 RDSPP 215
             +PP
Sbjct: 310 ASTPP 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,520,843
Number of Sequences: 5004
Number of extensions: 54307
Number of successful extensions: 147
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)