Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30278
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.38 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.66 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   3.5  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    22   4.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   6.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.2  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   8.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   8.2  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 72  EPALAHLSSTGFPLPVAQPPSSWHALPPPEY-VGQHAPTEVEA 197
           EP  +  SSTG  +P     ++  + PPP + V Q +P  + A
Sbjct: 354 EPPKSSESSTGSSIPKLNLSTALMSQPPPNFGVSQVSPVSMSA 396


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 129 PSSWHALPPPEYVGQHAPTEVEARRDSPP 215
           PS+   LPP  +  QH P++    R S P
Sbjct: 306 PSTAGFLPPSYHPHQHHPSQYHPHRGSSP 334


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 190 WKHGGILHLEWYPP 231
           W H GI++ E  PP
Sbjct: 73  WDHKGIVYFELLPP 86


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 102 PVYISQPRPPHPRLRREAEPEAEP 125



 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 158 PVYISQPRPPHPRLRREAEPEAEP 181



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 46  PVYIPQPRPPHPRLRREAEPEAEP 69



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 186 PVYIPQPRPPHPRLRREAEPEAEP 209



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 214 PVYIPQPRPPHPRLRREAEPEAEP 237



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 242 PVYIPQPRPPHPRLRREAKPEAKP 265


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 403 EDANLYKKCPNPKPVTCPVMG 341
           +DA+    CP  +  TCP+ G
Sbjct: 59  KDADGRVSCPVLRAYTCPICG 79


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 196 ASTSVGACCPTYSGGGKAC 140
           +S S+  C   Y G GK C
Sbjct: 75  SSRSIDPCASKYCGIGKEC 93


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 47  PVYIPQPRPPHPRLRREAEPEAEP 70



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 75  PVYIPQPRPPHPRLRREAEPEAEP 98



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 103 PVYIPQPRPPHPRLRREAEPEAEP 126


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 502 DGMNGWRESSP 470
           DGM G+R +SP
Sbjct: 105 DGMGGYRSASP 115


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 18  PVYIPQPRPPHPRLRREAEPEAEP 41



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 46  PVYIPQPRPPHPRLRREAEPEAEP 69



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 74  PVYIPQPRPPHPRLRREAEPEAEP 97



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 102 PVYIPQPRPPHPRLRREAEPEAEP 125



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 130 PVYIPQPRPPHPRLRREAKPEAEP 153



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 156 PEYVGQHAPTEVEARRDSPPRVVP 227
           P Y+ Q  P     RR++ P   P
Sbjct: 158 PVYIPQPRPPHPRLRREAEPEAEP 181


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,228
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)