Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30278
(545 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 36 0.018
At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein ... 33 0.12
At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein ... 33 0.16
At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) / ... 30 0.88
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 30 0.88
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 30 1.2
At5g09560.1 68418.m01107 KH domain-containing protein various pr... 29 1.5
At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f... 29 1.5
At1g60060.1 68414.m06766 expressed protein 29 1.5
At4g34440.1 68417.m04894 protein kinase family protein contains ... 29 2.0
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 29 2.0
At3g50590.1 68416.m05533 transducin family protein / WD-40 repea... 29 2.7
At2g24570.1 68415.m02934 WRKY family transcription factor identi... 29 2.7
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 29 2.7
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 29 2.7
At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138... 29 2.7
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ... 28 3.5
At5g35732.1 68418.m04275 expressed protein 28 3.5
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 28 3.5
At3g22830.1 68416.m02877 heat shock transcription factor family ... 28 3.5
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 28 3.5
At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative v... 28 4.7
At5g08230.1 68418.m00965 PWWP domain-containing protein putative... 28 4.7
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 28 4.7
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 28 4.7
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 6.2
At2g28070.1 68415.m03408 ABC transporter family protein 27 6.2
At1g70460.1 68414.m08107 protein kinase, putative contains Pfam ... 27 6.2
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 27 6.2
At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /... 27 8.2
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ... 27 8.2
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 27 8.2
At3g48860.2 68416.m05337 expressed protein 27 8.2
At3g48860.1 68416.m05336 expressed protein 27 8.2
At3g23660.1 68416.m02975 transport protein, putative similar to ... 27 8.2
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 27 8.2
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 8.2
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 35.9 bits (79), Expect = 0.018
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +3
Query: 42 SQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRV 221
S +++ P + + S P PVAQP ++ PPPE P AR DS P V
Sbjct: 587 SPPVSTTPSAVPEASTIPSPPAPAPVAQPTHVFNQTPPPE----QTPKSGAARTDSEPEV 642
Query: 222 VPSW 233
W
Sbjct: 643 SSFW 646
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 33 PAASQSLTSAE---RVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARR 203
PAAS+S ++ +P ++ +T P+PV+QPP++ LP V Q PT
Sbjct: 507 PAASKSFPISQPPTTSKPFVSQPPNTSKPMPVSQPPTTSKPLP----VSQPPPTFQSTCP 562
Query: 204 DSPP 215
PP
Sbjct: 563 SQPP 566
>At5g41060.1 68418.m04991 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 410
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 228 SWGNFSVKSAIIY----LFLYYLTRGRSPGTALTTGHPPATHPITGHVTGLG 371
SWG + A+++ L L LT GR PG HPP + G+ TG G
Sbjct: 74 SWGVSIILVAVVFTIYDLILLMLTSGRDPGIIPRNSHPPEPEVVDGN-TGSG 124
>At3g26935.1 68416.m03371 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 443
Score = 32.7 bits (71), Expect = 0.16
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +3
Query: 228 SWGNFSVKSAIIY----LFLYYLTRGRSPGTALTTGHPPATHPITGHV 359
SWG V A+++ L L LT GR PG HPP + G++
Sbjct: 74 SWGVSIVAVAVVFTIYDLILLLLTSGRDPGIIPRNAHPPEPETLDGNM 121
>At4g25110.1 68417.m03612 latex-abundant family protein (AMC2) /
caspase family protein contains similarity to
latex-abundant protein [Hevea brasiliensis] gb:AAD13216;
contains Pfam profile PF00656: ICE-like protease
(caspase) p20 domain
Length = 418
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 72 EPAL-AHLSSTGFPLPVAQP-PSSWHALPPPEYVGQHAPTEVEARRDSPPRVVP 227
EP L +H S++ FP P + P PS++ PP HAP +PP P
Sbjct: 37 EPRLQSHASASPFPFPNSSPAPSTFIYPPPTPSPYTHAPHAPSPFNHAPPDSYP 90
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = +3
Query: 33 PAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSP 212
PA + + A +V P ++ +T P P PP+S + PP APT SP
Sbjct: 75 PAVTPTSPPAPKVAPVIS--PATPPPQPPQSPPASAPTVSPPPVSPPPAPTSPPPTPASP 132
Query: 213 P 215
P
Sbjct: 133 P 133
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +3
Query: 66 RVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAP 182
RV P + S P P+ PP H+ PPP Y P
Sbjct: 532 RVPPPQPPMPSPSPPSPIYSPPPPVHSPPPPVYSSPPPP 570
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 108 PLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPS 230
P PV PP ++ PPP +V P SPP V S
Sbjct: 553 PPPVHSPPPPVYSSPPPPHVYSPPPPVASPPPPSPPPPVHS 593
>At5g09560.1 68418.m01107 KH domain-containing protein various
predicted RNA binding proteins, Arabidopsis thaliana
Length = 563
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 93 SSTGFPLPVAQPPSSWHALPPPEYV 167
S+ PLP+ QPPS+ PPPEYV
Sbjct: 10 STARAPLPLPQPPSA----PPPEYV 30
>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
family protein similar to SP|Q9RHV9 Lysyl-tRNA
synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
stearothermophilus}; contains Pfam profile: PF00152 tRNA
synthetases class II (D, K and N)
Length = 602
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 94 LRCASAGSTRSALVSDCEAAGPKGKVRR 11
LRCASA S+ S+ + E + P G+ RR
Sbjct: 43 LRCASAASSSSSSATTAETSKPSGRNRR 70
>At1g60060.1 68414.m06766 expressed protein
Length = 386
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +3
Query: 81 LAHLSSTGFPLPVAQPPSSWH--ALPPPEYVGQH 176
L H SS+G+P A P +WH + PP +H
Sbjct: 219 LPHPSSSGYPFINASPSDTWHFPGVAPPHQQPEH 252
>At4g34440.1 68417.m04894 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 670
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 108 PLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPS 230
P P + PP S + PPP+ +P +++ P PS
Sbjct: 33 PTPPSSPPPSSISAPPPDISASFSPPPAPPTQETSPPTSPS 73
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = +3
Query: 33 PAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSP 212
P S S +S P+ + LSS P PPSS + PP + +P + SP
Sbjct: 59 PPLSLSPSSPPPPPPSSSPLSSLS-PSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 213 PRVVPS 230
P PS
Sbjct: 118 PPPPPS 123
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/79 (25%), Positives = 31/79 (39%)
Frame = +3
Query: 96 STGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPSWGNFSVKSAIIYLFL 275
S+ P PPSS + PP + +P + SPP PS S S +
Sbjct: 30 SSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSP 89
Query: 276 YYLTRGRSPGTALTTGHPP 332
+ +P ++L+ PP
Sbjct: 90 PSSSPSSAPPSSLSPSSPP 108
>At3g50590.1 68416.m05533 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); some
similarity to s-tomosyn isoform (GI:4689231)[Rattus
norvegicus]; contains non-consensus AT-AC splice sites at
intron 18
Length = 1606
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +3
Query: 36 AASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPP 215
A + + +SA A S T P PV+QP A P PE Q+ VE + PP
Sbjct: 1206 ATTTAPSSASAPVDPFAMSSWTQQPQPVSQPAPPGVAAPIPEDFFQNTIPSVEVAKTLPP 1265
>At2g24570.1 68415.m02934 WRKY family transcription factor identical
to WRKY transcription factor 17 GI:15991743 from
[Arabidopsis thaliana]
Length = 321
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 114 PVAQPPSSWHALPPPEYVGQHAPTEVEA 197
PV PPSS ++PPP V APT++ A
Sbjct: 76 PVHSPPSS--SVPPPVKVTTPAPTQISA 101
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 PALA--HLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPS 230
PA A H ST P P+ A P PE A T VEA ++PP P+
Sbjct: 24 PATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPA 77
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +3
Query: 75 PALA--HLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPS 230
PA A H ST P P+ A P PE A T VEA ++PP P+
Sbjct: 24 PATAPIHSPSTSPHKPKPTSPAISPAAPTPESTEAPAKTPVEAPVEAPPSPTPA 77
>At1g11990.1 68414.m01385 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'growth regulator protein -related' based on similarity
to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
tabacum], which, due to scienitific fraud was retracted.
Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
PMID:10400497.; expression supported by MPSS
Length = 590
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 541 YKKCPNPKFLTPDDGMNGW 485
+K C + + LTPDDG NG+
Sbjct: 175 WKPCADQRSLTPDDGKNGY 193
>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 541
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 172 CPTYSGGGK-ACHDEGGCATGSGKPVELRCAS 80
C TYS G K CHD+ C G+ K ++RC+S
Sbjct: 341 CKTYSNGFKYECHDKSSC-RGNIK-YDIRCSS 370
>At5g35732.1 68418.m04275 expressed protein
Length = 100
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 98 DGFSAARRTAPF-IVACFAPPRIRG 169
DGF++ PF I++CFA PR+ G
Sbjct: 45 DGFNSVIMRFPFSIISCFAVPRVSG 69
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 28.3 bits (60), Expect = 3.5
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = -2
Query: 226 GTTLGG--ESLRASTSVGACCPTYSGGGKACHDEGGCATGSGKPVELRCASAGSTRSALV 53
G T GG E+ S S GA S G A GG A G+ AS GST S
Sbjct: 400 GATSGGSAETSDESASGGAASGGESASGGAA--SGGSAETGGESTSSGVASGGSTGSESA 457
Query: 52 SDCEAAG 32
S A+G
Sbjct: 458 SAGAASG 464
>At3g22830.1 68416.m02877 heat shock transcription factor family
protein contains Pfam profile: PF00447 HSF-type
DNA-binding domain
Length = 406
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -3
Query: 198 VLPPRWEHAAPRILGGAKHATMKGAVRRAAENPSN 94
V P RWE A L G KH +K RR N SN
Sbjct: 125 VNPDRWEFANEGFLRGQKH-LLKNIRRRKTSNNSN 158
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = -2
Query: 211 GESLRASTSVGACCPTYSGGGKACHDEGGCATGSGKPVELRCASAGSTRSALVSDCEAA 35
G +STS T + GK C EG G EL C S + +VS E++
Sbjct: 2713 GSGAPSSTSNTNLANTLANKGKKCRLEGPIQVLRGHRRELVCCCVSSDQGVVVSSSESS 2771
>At5g39320.1 68418.m04761 UDP-glucose 6-dehydrogenase, putative very
strong similarity to SP|Q96558 UDP-glucose
6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase)
(UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam
profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase
family NAD binding domain, PF00984:
UDP-glucose/GDP-mannose dehydrogenase family central
domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase
family UDP binding domain
Length = 480
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 457 WDNPWD*TPSSHSSHRQVSKTWD 525
WD+P P S ++ +QVS TWD
Sbjct: 383 WDHPLHLQPMSPTTVKQVSVTWD 405
>At5g08230.1 68418.m00965 PWWP domain-containing protein putative
transcription factor (HUA2) - Arabidopsis thaliana,
EMBL:AF116556
Length = 1445
Score = 27.9 bits (59), Expect = 4.7
Identities = 28/94 (29%), Positives = 35/94 (37%)
Frame = +3
Query: 75 PALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSPPRVVPSWGNFSVKS 254
P L H S P P QPPSS PPP Q AP + PP P S+
Sbjct: 1126 PPLPHESP---PSPPPQPPSS---PPPPSSPPQLAPAPPPSDHCLPPPTAPLAPAQSI-- 1177
Query: 255 AIIYLFLYYLTRGRSPGTALTTGHPPATHPITGH 356
A+ + + P L G P +P+ H
Sbjct: 1178 ALPPSSITRPSMPSHPSLPLQPGFAPPAYPLLQH 1211
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 151 PPQNTWGSMLPPRWKHGGILHLEWYPPGVIFPLSLPSFIYSFII*P 288
PP T +LPP G+L PPG++ P++ P + II P
Sbjct: 135 PPVTTPPGLLPPITTPPGLLPPVTTPPGLLPPVTTPPGLLPPIINP 180
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +1
Query: 145 LCPPQNTWGSMLPPRWKHGGILHLEWYPPGVIFPLSLPSFIYSFII*PGVGPLGRPS 315
L PP T +LPP G+L PPG++ P+ P + G P G PS
Sbjct: 143 LLPPITTPPGLLPPVTTPPGLLPPVTTPPGLLPPIINPPPVTVPPPSSGYPPYGPPS 199
>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
similar to chloroplast membrane protein (ALBINO3)
(GI:3927828) [Arabidopsis thaliana]
Length = 1013
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -2
Query: 214 GGESLRASTSVGACCPTYSGGGKACHDEGGCATGSGKPVELRCAS 80
GG ST G+ P +GGG +GG SGK E + +S
Sbjct: 410 GGSGSPPSTGGGSGSPPSTGGGGGSPSKGGGGGKSGKSGEEKSSS 454
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Frame = +3
Query: 108 PLPVAQPPSSWHALPPPEYVGQ---HAPTEVEARRDSPP 215
P PV PP H+ PPP Y H+P PP
Sbjct: 657 PPPVFSPPPPMHSPPPPVYSPPPPVHSPPPPPVHSPPPP 695
>At2g28070.1 68415.m03408 ABC transporter family protein
Length = 730
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 81 LAHLSSTGFPLPVAQPPS 134
L H S+ GFP P+ Q PS
Sbjct: 344 LQHFSNAGFPCPIMQSPS 361
>At1g70460.1 68414.m08107 protein kinase, putative contains Pfam
PF00069: Protein kinase domain
Length = 710
Score = 27.5 bits (58), Expect = 6.2
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Frame = +3
Query: 30 GPAASQSLTSAERVEPALAHLSSTGFPLPVAQPP-SSWHALPPPEYVGQHAPTEVEARRD 206
GP + P +T P P PP +S HALPP T
Sbjct: 156 GPKKPKKHHPGPATSPPAPSAPATSPPAPPNAPPRNSSHALPPKS-------TAAGGPLT 208
Query: 207 SPPRVVPSWGN 239
SP R VPS GN
Sbjct: 209 SPSRGVPSSGN 219
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 175 CCPTYSGGGKACHDE-GGCATGSGKPVELRCASAGSTR 65
CC Y G K C++ GGC G+ +C + R
Sbjct: 468 CCEKYCGCSKDCNNRFGGCNCAIGQCTNRQCPCFAANR 505
>At5g47510.1 68418.m05866 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus], SEC14 cytosolic factor
(Phosphatidylinositol/phosphatidylcholine transfer
protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis]
and to SEC14 cytosolic factor (SP:P53989) [Candida
glabrata]
Length = 376
Score = 27.1 bits (57), Expect = 8.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 169 PTYSGGGKACHDEGGC 122
PT+ GG C D GGC
Sbjct: 255 PTFLGGNCTCSDHGGC 270
>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 830
Score = 27.1 bits (57), Expect = 8.2
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 219 VVPSWGNFSVKSAIIYLFLYYLTRGRSPGTALTTGHPPAT---HPITGHVTGL 368
V PSW F S + + L+ SP + +TG AT HP VTGL
Sbjct: 145 VCPSWATFPRSSTYMTNLITLLSTLSSPSASYSTGFQNATAGKHP--DRVTGL 195
>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
identical to cohesion family protein SYN3 [Arabidopsis
thaliana] GI:12006362; supporting cDNA
gi|12006361|gb|AF281155.1|AF281155
Length = 693
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/57 (24%), Positives = 24/57 (42%)
Frame = +3
Query: 42 SQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARRDSP 212
+QS + + + + HL GFP+ + PP ++ Q E E+ R P
Sbjct: 503 AQSPRTFDNDDMGIEHLRDGGFPVYMPSPPPRSSPFRTDDFTTQSGNWETESYRTEP 559
>At3g48860.2 68416.m05337 expressed protein
Length = 577
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +3
Query: 27 FGPAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARR 203
F S+ SA P+++ S+T P+P PPS P PT +R
Sbjct: 137 FAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVKTPVSIPPLDPPTRSRDKR 195
>At3g48860.1 68416.m05336 expressed protein
Length = 494
Score = 27.1 bits (57), Expect = 8.2
Identities = 16/59 (27%), Positives = 23/59 (38%)
Frame = +3
Query: 27 FGPAASQSLTSAERVEPALAHLSSTGFPLPVAQPPSSWHALPPPEYVGQHAPTEVEARR 203
F S+ SA P+++ S+T P+P PPS P PT +R
Sbjct: 137 FAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVKTPVSIPPLDPPTRSRDKR 195
>At3g23660.1 68416.m02975 transport protein, putative similar to
Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
sapiens]
Length = 765
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 119 DGQRKTRRTEVCQRWLDALCARQRLRGGWPE 27
+GQ R T VC++W+D+ + + L G+ +
Sbjct: 492 EGQTLLRVTTVCRQWIDSAVSSEELVQGFDQ 522
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 27.1 bits (57), Expect = 8.2
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 123 QPPSSWHALPPPEYVGQHAPTEVEARRD-SPPRVVPSWGN 239
QPPS+W + P GQ E E R+ P + P N
Sbjct: 135 QPPSNWQEIVGPPPAGQDRERERERERERERPSLAPVVNN 174
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Frame = +3
Query: 111 LPVAQPPSSWHALPPPEYVG------QHAPTEVEARRDSPPRVVPS 230
LP PPS+ LPPP+ V +H P+ + PPR +PS
Sbjct: 157 LPAPDPPSN--PLPPPKLVPPSHSPPRHLPSPPASEIPPPPRHLPS 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,095
Number of Sequences: 28952
Number of extensions: 347953
Number of successful extensions: 1430
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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