Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30277
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0182 + 13537522-13539699                                         29   2.8  
11_04_0226 + 15092313-15092873                                         27   6.4  
11_03_0057 + 9375083-9375088,9375904-9376031,9376107-9376166,937...    27   8.5  
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979...    27   8.5  

>01_03_0182 + 13537522-13539699
          Length = 725

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = +1

Query: 319 FSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLDEVAKGAVHVKLTQNGLSAA 483
           F R+ N  DIS    Y N+ D+L +    +   VLDE+ +  V V L   G S A
Sbjct: 601 FQRRTN--DISDVEHYKNIHDSLLVGDQPEGDGVLDELVEMWVRVLLYSAGKSRA 653


>11_04_0226 + 15092313-15092873
          Length = 186

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 185 LLDKSPHKNTGTVDALATLRTSNGNSKRQNAIF 87
           +LD+ P +NT T +A+ T  T+ G+     A+F
Sbjct: 25  VLDRMPDRNTVTCNAMLTGYTAAGDMANAEAVF 57


>11_03_0057 +
           9375083-9375088,9375904-9376031,9376107-9376166,
           9376832-9376892,9377434-9377583,9377667-9377822,
           9377905-9378116,9378572-9378673,9378785-9378924,
           9379781-9379932
          Length = 388

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 271 DPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRV 420
           DP  +  LE  LS E   R N E  ++ PY + N+++    PS +  +++
Sbjct: 164 DPLALRLLERMLSFEPKDRPNAEEALADPY-FRNIANVDREPSAQPVTKL 212


>02_05_0339 -
           28094581-28094817,28095011-28096381,28097713-28097922,
           28098047-28098283,28098677-28099041,28099661-28099970
          Length = 909

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 352 IPYLYDNLSDALYLPSVEDASRVLDEVAKGAVHVKLTQNGLSAAIED 492
           IPY  DN     Y+PS    SR LD   +  +   L+++GL   ++D
Sbjct: 809 IPYPLDNFDWTGYMPSGPPLSR-LDINMEAKLSSMLSESGLPLCVDD 854


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,834,773
Number of Sequences: 37544
Number of extensions: 220640
Number of successful extensions: 524
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)