Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30277
         (502 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos...    27   5.4  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    27   5.4  
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos...    27   7.1  
At5g36830.1 68418.m04413 hypothetical protein several hypothetic...    27   9.4  
At5g36734.1 68418.m04397 hypothetical protein                          27   9.4  
At5g20420.1 68418.m02428 SNF2 domain-containing protein / helica...    27   9.4  
At3g46720.1 68416.m05072 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.4  
At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transfera...    27   9.4  
At2g14780.1 68415.m01673 hypothetical protein similar to  At3g43...    27   9.4  
At1g34710.1 68414.m04315 hypothetical protein similar to At3g433...    27   9.4  
At1g27810.1 68414.m03405 hypothetical protein similar to At3g433...    27   9.4  

>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
           CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
          Length = 543

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 230 ADTVLNGFDFREFPELLDKSPHKNTG 153
           ADTV+  FDF+E  E+L   P  + G
Sbjct: 109 ADTVMEEFDFKEIDEVLKYYPQGHHG 134


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
 Frame = +1

Query: 295 EETLSVED----FSRKNNEGDISIPYLYDNLS 378
           E T++V D    +++ + +GD  IP+LYDN+S
Sbjct: 466 ERTINVFDPIAHYAKAHAQGDDIIPWLYDNIS 497


>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
           phosphatidylinositol transfer-like protein, putative
           similar to phosphatidylinositol transfer-like protein
           III (GI:14486705) [Lotus japonicus]; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminu
          Length = 612

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 227 DTVLNGFDFREFPELLDKSPH 165
           DT+   F+F EF E+L   PH
Sbjct: 145 DTIFEDFEFEEFDEVLKYYPH 165


>At5g36830.1 68418.m04413 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 177

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 FDFREFPELLDKSPHKNTGTVDALATL 129
           FDF  F  +LDKS +KN   VD +  L
Sbjct: 63  FDFTPFDYILDKSAYKNV-LVDVIGAL 88


>At5g36734.1 68418.m04397 hypothetical protein
          Length = 177

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 FDFREFPELLDKSPHKNTGTVDALATL 129
           FDF  F  +LDKS +KN   VD +  L
Sbjct: 63  FDFTPFDYILDKSAYKNV-LVDVIGAL 88


>At5g20420.1 68418.m02428 SNF2 domain-containing protein / helicase
            domain-containing protein low similarity to SP|Q9U7E0
            Transcriptional regulator ATRX homolog {Caenorhabditis
            elegans}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 1261

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +1

Query: 289  FLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVE---DASRVLDEVAKGAVHVKL 459
            F+ E L   D   K N G    P+L +N +  L+L  +    DAS V DE  +G   +K 
Sbjct: 905  FIHEVLMELDQKFKTNHGVNKAPHLLENRARKLFLDIIAKKIDAS-VGDERLQGLNMLKN 963

Query: 460  TQNG 471
              NG
Sbjct: 964  MTNG 967


>At3g46720.1 68416.m05072 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 447

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 212 GFDFREFPELLDKSPHKNTGTVDALATLRTSNGNS 108
           GF F   PE +  S H+  G V+ + TL  ++  S
Sbjct: 56  GFQFVTIPETIPLSQHEALGVVEFVVTLNKTSETS 90


>At3g46690.1 68416.m05068 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 452

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 212 GFDFREFPELLDKSPHKNTGTVDALATL-RTSNGNSK 105
           GFDF   PE L +S  K  G  + L  L +TS  + K
Sbjct: 57  GFDFVTIPESLPQSESKKLGPAEYLMNLNKTSEASFK 93


>At2g14780.1 68415.m01673 hypothetical protein similar to
           At3g43370, At1g34710, At1g27810, At3g42760, At1g25784,
           At4g08890
          Length = 235

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 FDFREFPELLDKSPHKNTGTVDALATL 129
           FDF  F  +LDKS +KN   VD +  L
Sbjct: 116 FDFTPFDYILDKSAYKNV-LVDVIGAL 141


>At1g34710.1 68414.m04315 hypothetical protein similar to At3g43370,
           At2g14780, At1g27810, At3g42760, At1g25784, At4g08890
          Length = 235

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 FDFREFPELLDKSPHKNTGTVDALATL 129
           FDF  F  +LDKS +KN   VD +  L
Sbjct: 116 FDFTPFDYILDKSAYKNV-LVDVIGAL 141


>At1g27810.1 68414.m03405 hypothetical protein similar to At3g43370,
           At2g14780, At1g34710, At3g42760, At1g25784, At4g08890
          Length = 230

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 209 FDFREFPELLDKSPHKNTGTVDALATL 129
           FDF  F  +LDKS +KN   VD +  L
Sbjct: 116 FDFTPFDYILDKSAYKNV-LVDVIGAL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,981,618
Number of Sequences: 28952
Number of extensions: 193146
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)