Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30275
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    34   0.019
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.54 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    29   0.54 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.6  
SPAC25B8.10 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   5.0  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   6.6  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   8.8  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   8.8  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   8.8  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   8.8  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   8.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.8  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.019
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -2

Query: 403 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 254
           L R  S +   SSSS    H + P T S +P + ST S  G +VIT+ D+
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 338 RPVQDHERRRTSHNCLRAVPGQDRQRD-*HDCPANVGGSFASYSRN 472
           +PV +H+ ++TS      VPG  R +D   DCP++    F   S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 473 SSENSSQMTLQRLQDSHVNLFDG 405
           S++NSS  + Q + DS+VN+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 133 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 35
           +L + NP + +  +H    TT  I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 271 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 137
           +T ++  WTS T H   A      R+++  + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342


>SPAC25B8.10 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 115 PFTVTFTIHTLHFTTKTITNLFNLPKNQKKK 23
           PF+   T+  LH    + + ++ LP+ +K+K
Sbjct: 188 PFSRCLTVEELHTLMNSFSFIYKLPEEEKEK 218


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 586 LIVKDRISIPILPTS 542
           LIV DR+ +PILPT+
Sbjct: 37  LIVIDRVELPILPTT 51


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 608 LDIVVDVFNREGQNLDSHSSDVRRSH 531
           L++++D+F RE  N+    SD+R ++
Sbjct: 279 LNVLIDIFIREINNIPDELSDLRYAY 304


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +3

Query: 162 IVSGGCFGPTTKRTIVGGW--AWAWCL 236
           +++ G +G        G W  AWAWCL
Sbjct: 343 LLTSGWWGMARHINYFGDWIMAWAWCL 369


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 377 CEKFVFVHDLALGDSGHRERHSLGRFNVLAHRVQCHHFKGYTLDVRN 237
           C +   VHD +  D+ H  + +L  ++ +AHRV       Y+ D  N
Sbjct: 794 CFEKKLVHDSS-SDTSHPYKSALDLYDFMAHRVVITFEPRYSDDTNN 839


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
 Frame = +2

Query: 170  RWLFRADHETYHSGWMG-----MGLVSGYGRPTYIP*SDDIEPD 286
            RWLFR +     + W+G        V+GY R  Y   +D I  D
Sbjct: 1386 RWLFRENSRNQANSWIGNCQLCRTRVTGYKRKIYGKKADKIAMD 1429


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 524 YQARELVPVFVHLFYCKSSENSSQMTLQRLQDSHVNL 414
           Y+ +E +      + C SS + +   L+RLQD  +N+
Sbjct: 228 YRYKEQIGFSSWTYKCTSSIDGNAYVLKRLQDCSINI 264


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 520 KPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--MLISLTVLPRNCSQAVV 374
           +P +  L L+TS T   P++      N+CR++  +  S  + PR+ S  V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 336 VAQCKIMNEDELLTTACEQFLGKTVKEINMTVLQTL 443
           + +  ++    +L+   EQF+   VKEIN  +L  L
Sbjct: 85  IKEAYVVRAHRILSIFQEQFIENVVKEINWEILAIL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,480
Number of Sequences: 5004
Number of extensions: 60242
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)