Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30275
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121 34 0.10
10_08_0404 + 17653942-17654877,17656616-17657137 34 0.10
03_06_0433 + 33884858-33884926,33885027-33885263 32 0.42
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 31 0.55
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 31 0.55
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 31 0.97
10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594 30 1.7
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 2.2
10_07_0138 + 13325418-13325954 29 3.0
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 3.9
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 29 3.9
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 5.2
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045... 28 6.8
03_05_0877 + 28443481-28443538,28443641-28443911,28444028-284442... 28 6.8
06_01_0939 + 7232682-7232933,7233048-7233228,7233354-7233463,723... 27 9.0
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228... 27 9.0
>10_08_0409 - 17710118-17710624,17711003-17711701,17711828-17712121
Length = 499
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/62 (22%), Positives = 32/62 (51%)
Frame = +3
Query: 417 INMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVY 596
+ V +EG R + ++T+EE+++ +F V + D+ + G+ I + +K +
Sbjct: 116 VKQLVKGVIEGETRVLAASMTMEEIFQGTKKFKQEVFDQVQLDLNKFGLYIYNANVKQLV 175
Query: 597 DD 602
D+
Sbjct: 176 DE 177
>10_08_0404 + 17653942-17654877,17656616-17657137
Length = 485
Score = 33.9 bits (74), Expect = 0.10
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +3
Query: 402 KTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 581
K +N V +EG R + ++T+EE+++ F V E ++ + G+ I +
Sbjct: 92 KLSHHVNELVKGVIEGETRVLAASMTMEEIFQGTKSFKQAVFENVQLELNQFGLIIYNAN 151
Query: 582 IKDVYD 599
+K + D
Sbjct: 152 VKQLVD 157
>03_06_0433 + 33884858-33884926,33885027-33885263
Length = 101
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 334 PVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 209
P VSGT V T F+ +TS +RWT T+H + P
Sbjct: 24 PKWVSGTTRRVYTQFVADFDQLTSNRVRWTPYTQHDDNDRAP 65
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 31.5 bits (68), Expect = 0.55
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Frame = +3
Query: 348 KIMNEDELLTTACEQFLGKTVKEINMTVLQTLE-GHL-RAILGTLTV-EEVYKDRDQFAG 518
+IM +D+ L T F KE+++ L L G + A+ G V +++Y D+ Q
Sbjct: 406 QIMTKDDPLPTGPNNF-----KEVHVDFLPELSTGFVDSAVSGAAVVPDDIYLDKSQKFT 460
Query: 519 LVREVAAPDVGRMGIEIL-SFTIKDVYDDVQ 608
L ++ +GR+G + + + ++ +++ DVQ
Sbjct: 461 LFKDFTVSGLGRLGCDFVENVSLLEIWKDVQ 491
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 325 VSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 209
VSGT V T F+ + +RWTS T+H + H P
Sbjct: 450 VSGTTRRVYTQFVADFDQLMPDRVRWTSYTQHDVNDHAP 488
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 225 AWCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVA 341
AW L V R S+ M +NP + V+ G+PL + V+
Sbjct: 438 AWLLCDKVARKSVTCMNINPCYDIVDMCYGMPLALIRVS 476
>10_08_0407 - 17699375-17699851,17700827-17701009,17702292-17702594
Length = 320
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/69 (20%), Positives = 34/69 (49%)
Frame = +3
Query: 384 CEQFLGKTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGI 563
C++ ++ + V +EG R + ++T+EE+++ +F V + + +G+
Sbjct: 97 CDEEAIRSPNHVIDLVKGVIEGETRVLASSMTMEEIFQGTKKFKQQVFDQVQLALNELGL 156
Query: 564 EILSFTIKD 590
I S ++D
Sbjct: 157 YIYSANVQD 165
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 72 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 230
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>10_07_0138 + 13325418-13325954
Length = 178
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 484 KRCTKTGTNSRAWYAKWLRRTSEEWESRFCPSR 582
+RC++ SR W ++ RR W R C R
Sbjct: 85 RRCSRRWRRSRRWRSRCSRRWRRSWRRRRCSRR 117
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 184 PKQPPETISASLGPTVWMLPILNPFTVTF 98
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 72 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 251
V+ C C+V V + N + P + LI G P+ K +VGG VTDV
Sbjct: 1167 VIYCLRCLVDVDIPL----NQGCLAPVKILIPKGSFLSPSDKAAVVGGNVLTSQRVTDVV 1222
Query: 252 RISLEVMTLNPMC 290
++ + + C
Sbjct: 1223 LMAFQACACSQGC 1235
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 60 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 161
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>08_02_0202 -
14202996-14203241,14203630-14203823,14203947-14204559,
14205422-14205535
Length = 388
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 467 ENSSQMTLQRLQDS-HVNLFDGLAQELLAGSCEKFVFVHDLALGD 336
++ + L RL D ++ L D + G C KF +D+ +GD
Sbjct: 319 QDEKTIRLSRLGDKWNIRLSDSSGNRRMVGGCRKFAEDNDVGVGD 363
>03_05_0877 +
28443481-28443538,28443641-28443911,28444028-28444242,
28444329-28445057,28445143-28445297,28445384-28445965
Length = 669
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 479 SRRGVQRQGPIRG--LGTRSGCAGRRKNGNRDSVLHD 583
++ G + +GP+ G LGT C G +NG+ D V +D
Sbjct: 29 AKGGRKTKGPVIGIDLGTTYSCVGVYRNGHVDIVAND 65
>06_01_0939 +
7232682-7232933,7233048-7233228,7233354-7233463,
7233833-7233911,7233979-7234046,7234129-7234195,
7234704-7234834
Length = 295
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 386 AGSCEKFVFVHDLALGDSGHRERHSLGRFNVLAH 285
A + +F+ H L LG HR RH R+ +L H
Sbjct: 13 AAAARRFLLPH-LFLGRRRHRHRHDQVRYTILHH 45
>06_01_0318 -
2284481-2284594,2285340-2286044,2286589-2286609,
2287186-2287257,2287762-2287842,2288059-2288133,
2288197-2288484
Length = 451
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +2
Query: 311 RSAAHGDRSRPVQ-DHERRRTSHNCLRAVPGQDRQRD*HDCPANVGGSFASYSRNSYSRR 487
RS+ RSR + DH+ R + R G+ + R+ HD A Y R+SYS R
Sbjct: 276 RSSPRRRRSRSHERDHDSERDRSDRDR---GRHKDRE-HDRHAREDRD-RDYRRSSYSSR 330
Query: 488 GVQRQG 505
V RQG
Sbjct: 331 NVDRQG 336
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,070
Number of Sequences: 37544
Number of extensions: 449614
Number of successful extensions: 1472
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -