Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30275
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)             265   2e-71
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)                   70   1e-12
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   31   0.57 
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)                     31   0.75 
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)          30   1.3  
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)                  28   5.3  
SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)                     28   7.0  
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)          28   7.0  
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)           28   7.0  
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)                   27   9.2  
SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3)                  27   9.2  

>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score =  265 bits (649), Expect = 2e-71
 Identities = 124/164 (75%), Positives = 139/164 (84%)
 Frame = +3

Query: 123 MGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCEYVE 302
           MGN +TVGPNEAL+VSGGC G   K+T++GGWA+AW  VTDVQ ISLEVMTLNP CE VE
Sbjct: 284 MGNCYTVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLEVMTLNPTCEAVE 343

Query: 303 TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEINMTVLQTLEGHLRAILGTLTV 482
           TAQGV +TVTGVAQ K+M E  LL TACEQFLGKT ++I   VLQTLEGHLRAILGTL+V
Sbjct: 344 TAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIESVVLQTLEGHLRAILGTLSV 403

Query: 483 EEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYL 614
           EE+YKDR+ FA LVREVA+PDVGRMGIEILSFTIKD+ D V YL
Sbjct: 404 EEIYKDREAFAALVREVASPDVGRMGIEILSFTIKDIEDHVDYL 447


>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
          Length = 393

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
 Frame = +3

Query: 336 VAQCKIMNED-ELLTTACEQFLGKTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQF 512
           + Q KI  ++ E+L  AC+QFLGK+ ++     L+TLEGH RAI+GT+TV          
Sbjct: 63  ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTV---------- 112

Query: 513 AGLVREVAAPDVGRMGIEILSFTIKDVYDDVQYLA 617
                EVA+ D+  MGI I+S+TIKD+ D+ + +A
Sbjct: 113 -----EVASSDLVNMGISIVSYTIKDIRDEEEAIA 142


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +2

Query: 377  NCLRAVPGQDRQRD*HDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCAGR 547
            N + + P Q R+R       +  G   + SR SYS  G +   P R    R+  AGR
Sbjct: 1006 NSIESSPHQSRRRSARSSGTSSSGFDTASSRGSYSSEGFRTIDPARAHALRNTTAGR 1062


>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
          Length = 638

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -2

Query: 427 VMLISLTVLPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDIRW 248
           V L+ L+  P N   A +RS    ++L    P   S +P++ S Y+ +   V+  RD   
Sbjct: 9   VELLRLSA-PSNNMDATIRSPGDPLVLERPPPRWSSNSPYSESYYNSLAV-VLQRRDWEN 66

Query: 247 TSVTR-HQAHAHPP 209
             VT+ ++  AHPP
Sbjct: 67  PGVTQLNRLAAHPP 80


>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
          Length = 418

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 442 WRVIC---ELFSELLQ*KRCTKTGTNSRAWYAKWLRRTSEEWESRFCP 576
           W +IC   EL+S       C    +N   W  +W    ++EW +R CP
Sbjct: 180 WHLICMRVELYSCSEDGSPCLDRDSNCANWANQWQCLKNKEWMTRNCP 227


>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2388

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 229 QAHAHPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPF 110
           QA   PPTM++ +  P  PP  I     P+V + P  NPF
Sbjct: 402 QASIPPPTMIQTLPPPSVPPPPIGVPNRPSV-LYPNNNPF 440


>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
          Length = 764

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 338 DSGHRERHSLGRFNVLAHRVQCHHFKGYTLDVRNQTP 228
           DSGH  R +L   NV  + +   H +  TLD R+  P
Sbjct: 342 DSGHVRRKTLDSRNVRRNTLDSRHVRRNTLDSRHVRP 378


>SB_22283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 602 IVVDVFNREGQNLDSHSSDVRRSHFAYQARELV 504
           ++VD  N  G+ L  HS +V+  +F+Y+ + L+
Sbjct: 229 VIVDASNSPGKILVVHSGNVKEENFSYRDKTLM 261


>SB_35332| Best HMM Match : CBM_X (HMM E-Value=2.4)
          Length = 400

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -1

Query: 602 IVVDVFNREGQNLDSHSSDVRRSHFAYQAREL 507
           ++VD  N  G+ L  HS +V+  +F+Y+ + L
Sbjct: 205 VIVDASNSPGKILVVHSGNVKEENFSYRDKTL 236


>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
          Length = 407

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 144 GPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPM--CEYVETAQGV 317
           GPNE L+ +GGC    T   ++GG++   CL      +SL+  T   +  C Y     G 
Sbjct: 325 GPNECLVNNGGC--SHTCLNLIGGYS---CLCPPGFELSLDKRTCTDINECGYNRGGCGQ 379

Query: 318 PLTVT-GVAQCKIMN 359
             T + G   C  +N
Sbjct: 380 ICTNSLGSYNCSCLN 394


>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
          Length = 425

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = +3

Query: 264 EVMTLNPMCEYVETAQGVPLTVTG--VAQCKIMNEDELLTTACEQFLGKTVKEINMT 428
           EV T     E   TA  V  T T   V       E  + TTA E  +  T KE+ MT
Sbjct: 142 EVTTTTTAAEATTTATEVTTTTTATEVTMTTTATELTMTTTATEVTMTTTAKEVTMT 198


>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -1

Query: 374 EKFVFVHDLALGDSGHRERHSLGRFNVL--AHRVQCH 270
           EK V    L L D GHR +HSL   N L   H    H
Sbjct: 52  EKCVSALKLNLRDQGHRNKHSLSPPNALMATHNASSH 88


>SB_5496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 574 DRISIPILPTSGAATSRTKPANWSLSLYTSSTVRVPRI 461
           DRIS   +PT+  +     P +WS +L +S ++   RI
Sbjct: 232 DRISRNFMPTNELSRDSWHPLSWSWTLRSSCSILTNRI 269


>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 512 ELVPVFVHLFYCKSSEN-SSQMTLQRLQDSHVNLFDGL 402
           +L+P +  +   K  ++ SS+   Q L+D+  NLFDGL
Sbjct: 605 KLIPKYHEILIKKIEQDPSSEKRYQALRDTTYNLFDGL 642


>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
          Length = 378

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 59  CYRFSCEVQCVYRESHCKRIQNGQHPHCR 145
           C   SC  QC ++  H  R +    PHCR
Sbjct: 51  CCGQSCHQQCFWKWIHTHRTERITCPHCR 79


>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 430 SCKRWRVICELFSELLQ*KRCTKTG-TNSRAWYAKWLRRTSEEWESRFCPS 579
           +CK W+++CE    LL  ++C + G T      +K  RR S + ++   P+
Sbjct: 231 TCKCWQILCE--DNLLWKQKCREAGITEDPHGTSKLPRRRSTQTQNNTAPT 279


>SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3)
          Length = 253

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 20/52 (38%), Positives = 28/52 (53%)
 Frame = -2

Query: 424 MLISLTVLPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVI 269
           + IS T L    S+   R++SS     W+ P+ +  T WAVSTY   G NV+
Sbjct: 98  LAISGTFLHTIISRIFTRNASSAA---WSGPLKLWRTGWAVSTY---GSNVL 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,445,972
Number of Sequences: 59808
Number of extensions: 499522
Number of successful extensions: 1564
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)