Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30275
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 33 0.22
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 33 0.22
U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger pro... 32 0.29
L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger pro... 32 0.29
L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger pro... 32 0.29
U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protei... 31 0.87
U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory ... 29 2.0
U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory ... 29 2.0
U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory ... 29 2.0
U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein. 29 2.0
U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein. 29 2.0
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein. 29 3.5
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein. 29 3.5
Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical ... 28 4.6
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 27 8.1
U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protei... 27 8.1
U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protei... 27 8.1
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 27 8.1
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 453 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
LR +LGT T+ E+ +RD A + +V G+++ IKD+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDI 277
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 453 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
LR +LGT T+ E+ +RD A + +V G+++ IKD+
Sbjct: 231 LRNVLGTKTLSEMLSERDAIASISEKVLDEGTDPWGVKVERVEIKDI 277
>U20555-1|AAC46918.1| 839|Caenorhabditis elegans zinc finger
protein protein.
Length = 839
Score = 32.3 bits (70), Expect = 0.29
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 538 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVML-ISLTVLPRNCSQAVVRSSS 362
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 361 SFMILHWATPVTVSGTPWAVS 299
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>L23645-6|AAO91714.1| 635|Caenorhabditis elegans Zinc finger
protein protein 1,isoform c protein.
Length = 635
Score = 32.3 bits (70), Expect = 0.29
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 538 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVML-ISLTVLPRNCSQAVVRSSS 362
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 468 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 527
Query: 361 SFMILHWATPVTVSGTPWAVS 299
S + H ATP T +G P A +
Sbjct: 528 SNIQNHRATPST-AGAPMAAT 547
>L23645-4|AAK26137.1| 867|Caenorhabditis elegans Zinc finger
protein protein 1,isoform a protein.
Length = 867
Score = 32.3 bits (70), Expect = 0.29
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 538 AATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRTVML-ISLTVLPRNCSQAVVRSSS 362
A TS PAN S SL+ +RK PSN+ TV L + T L + + +
Sbjct: 700 APTSVPLPANHSSSLFEDIKAPKATYSRKTPSNIPLTVPLSTAATALTTTTAASSGAPVN 759
Query: 361 SFMILHWATPVTVSGTPWAVS 299
S + H ATP T +G P A +
Sbjct: 760 SNIQNHRATPST-AGAPMAAT 779
>U40409-9|AAA81390.3| 314|Caenorhabditis elegans Stomatin protein 2
protein.
Length = 314
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 453 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQ 608
LR +LGT ++ E+ DR+ A ++ + GI++ IKDV +Q
Sbjct: 190 LRNMLGTRSLSEILSDRETLAASMQTILDEATESWGIKVERVEIKDVRLPIQ 241
>U41021-3|AAV28352.1| 317|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform c protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.0
Identities = 40/187 (21%), Positives = 77/187 (41%)
Frame = +3
Query: 48 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 227
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 49 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 97
Query: 228 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 407
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 98 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 154
Query: 408 VKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 587
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 155 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 207
Query: 588 DVYDDVQ 608
DV VQ
Sbjct: 208 DVRLPVQ 214
>U41021-2|AAM54192.1| 392|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform b protein.
Length = 392
Score = 29.5 bits (63), Expect = 2.0
Identities = 40/187 (21%), Positives = 77/187 (41%)
Frame = +3
Query: 48 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 227
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 228 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 407
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 408 VKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 587
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 588 DVYDDVQ 608
DV VQ
Sbjct: 283 DVRLPVQ 289
>U41021-1|AAA82333.1| 481|Caenorhabditis elegans Mechanosensory
abnormality protein2, isoform a protein.
Length = 481
Score = 29.5 bits (63), Expect = 2.0
Identities = 40/187 (21%), Positives = 77/187 (41%)
Frame = +3
Query: 48 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 227
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 228 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 407
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 408 VKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 587
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 588 DVYDDVQ 608
DV VQ
Sbjct: 283 DVRLPVQ 289
>U26736-1|AAA87552.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 29.5 bits (63), Expect = 2.0
Identities = 40/187 (21%), Positives = 77/187 (41%)
Frame = +3
Query: 48 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 227
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 228 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 407
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 408 VKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 587
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 588 DVYDDVQ 608
DV VQ
Sbjct: 283 DVRLPVQ 289
>U26735-1|AAA87551.1| 481|Caenorhabditis elegans MEC-2 protein.
Length = 481
Score = 29.5 bits (63), Expect = 2.0
Identities = 40/187 (21%), Positives = 77/187 (41%)
Frame = +3
Query: 48 LNKFVIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWA 227
L+ +I + S C+ V+ ++ I +G ++ GG GP G +
Sbjct: 124 LSYLLIFFTLPISACMCIKVVQEYERAVIFRLGR----LMPGGAKGP-------GIFFIV 172
Query: 228 WCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKT 407
C+ T +++ L V++ + + + V + V V +I N +T + ++
Sbjct: 173 PCIDT-YRKVDLRVLSFEVPPQEILSKDSVTVAVDAVVYFRISNATISVTNV--EDAARS 229
Query: 408 VKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIK 587
K + T L R ILGT T+ E+ DR+ + ++ G+++ +K
Sbjct: 230 TKLLAQTTL-------RNILGTKTLAEMLSDREAISHQMQTTLDEATEPWGVKVERVEVK 282
Query: 588 DVYDDVQ 608
DV VQ
Sbjct: 283 DVRLPVQ 289
>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
protein C12C8.3b protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---NMTVLQTLEGHLRAILGT 473
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
protein C12C8.3a protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---NMTVLQTLEGHLRAILGT 473
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
Length = 1147
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---NMTVLQTLEGHLRAILGT 473
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568
>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
Length = 1143
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +3
Query: 318 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---NMTVLQTLEGHLRAILGT 473
PL VA +++NE +LL CE+ G T+K+I +T T E +RA T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564
>Z83233-9|CAB05766.1| 405|Caenorhabditis elegans Hypothetical
protein K06B4.10 protein.
Length = 405
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 143 DSVDVAHFESFYSDFHDTHTALHN 72
D +D+AH ESF+++ H T T N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253
>AL023847-1|CAA19545.1| 364|Caenorhabditis elegans Hypothetical
protein Y57A10C.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 385 QAVVRSSSSFMILHWATPVTVSGTPWAVS-TYSHIGFNVITSRDIRWTSVTRH 230
Q + + S + H T +T++GT W VS S I F ++ ++RW + H
Sbjct: 178 QIIAITCSCLALFHKFTIITINGT-WIVSCACSSIVFFLVERINLRWKAEMEH 229
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 348 KIMNEDELLTTACEQFLGKTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDR 503
+I +ED+L +T E+FLGK VKE T L+ ++ T+ + + +R
Sbjct: 391 EIGDEDDL-STPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPFYTMPDAHDER 441
>U29378-3|AAA68723.2| 330|Caenorhabditis elegans Stomatin protein
1, isoform a protein.
Length = 330
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 453 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
LR ILGT T+ E+ DR++ + ++ GI++ ++DV
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDV 206
>U29378-2|ABS19471.1| 325|Caenorhabditis elegans Stomatin protein
1, isoform b protein.
Length = 325
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 453 LRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
LR ILGT T+ E+ DR++ + ++ GI++ ++DV
Sbjct: 160 LRTILGTHTLSEILSDREKISADMKISLDEATEPWGIKVERVELRDV 206
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 392 VPGQDRQRD*HDCPANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCA 541
V G +Q CP+ +F+ S+N Y G G G +GCA
Sbjct: 1419 VNGTPKQCTASPCPSGYKCTFSKKSKNYYCCSSKASPGSSSGSGAANGCA 1468
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,472,107
Number of Sequences: 27780
Number of extensions: 363706
Number of successful extensions: 1128
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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