Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30275
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64870.1 68418.m08160 expressed protein 37 0.012
At5g25260.1 68418.m02994 expressed protein 35 0.050
At5g25250.1 68418.m02993 expressed protein 33 0.15
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 30 1.1
At5g54100.1 68418.m06736 band 7 family protein similar to stomat... 30 1.4
At4g27585.1 68417.m03962 band 7 family protein similar to stomat... 29 1.9
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 29 3.3
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 28 4.3
At2g38570.1 68415.m04738 expressed protein ; expression supporte... 28 4.3
At2g17120.1 68415.m01976 peptidoglycan-binding LysM domain-conta... 28 4.3
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 28 5.7
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 5.7
At5g58880.1 68418.m07377 hypothetical protein 27 7.5
At1g30360.1 68414.m03712 early-responsive to dehydration stress ... 27 7.5
At5g01920.1 68418.m00111 protein kinase family protein contains ... 27 10.0
At3g46980.2 68416.m05102 transporter-related low similarity to b... 27 10.0
At3g46980.1 68416.m05101 transporter-related low similarity to b... 27 10.0
At3g01760.1 68416.m00114 lysine and histidine specific transport... 27 10.0
>At5g64870.1 68418.m08160 expressed protein
Length = 479
Score = 36.7 bits (81), Expect = 0.012
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Frame = +3
Query: 150 NEALIVSGGCFGPTTKRTIVGGWAWAW--CLVTDVQRISLEVMTLNPMCEYVETAQGVPL 323
++ L ++GG G T + W + W C V DV ++ + M +++ +P
Sbjct: 9 SQYLAITGG--GITDIKLAKKSWVFPWQSCTVFDVSPVNY-TFEVQAM-----SSEKLPF 60
Query: 324 TVTGVAQCKIMNEDE---LLTTACEQFLGKTVKEINMTVLQTLEGHLRAILGTLTVEEVY 494
+ V +D LL K +N V +EG R ++ ++T+EEV+
Sbjct: 61 VIPAVFTIGPRVDDPHALLLYAMLMSQHDKHSNHVNELVQGVIEGETRVLVASMTMEEVF 120
Query: 495 KDRDQFAGLVREVAAPDVGRMGIEILSFTIKDVYD 599
K +F V + ++ + G+ I + +K + D
Sbjct: 121 KGTKEFKKEVFDKVQLELNQFGLVIYNANVKQLVD 155
>At5g25260.1 68418.m02994 expressed protein
Length = 463
Score = 34.7 bits (76), Expect = 0.050
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = +3
Query: 402 KTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 581
K +N V +EG R + ++T+EE++K +F V + ++ + G+ I +
Sbjct: 89 KQSNHVNELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELDQFGLVIYNAN 148
Query: 582 IKDVYD 599
+K + D
Sbjct: 149 VKQLVD 154
>At5g25250.1 68418.m02993 expressed protein
Length = 470
Score = 33.1 bits (72), Expect = 0.15
Identities = 15/66 (22%), Positives = 33/66 (50%)
Frame = +3
Query: 402 KTVKEINMTVLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFT 581
K ++ V +EG R + ++T+EE++K +F V + ++ + G+ I +
Sbjct: 89 KDSNHVHELVEGVIEGETRVLAASMTMEEIFKGTKEFKKEVFDKVQLELNQFGLVIYNAN 148
Query: 582 IKDVYD 599
+K + D
Sbjct: 149 VKQLVD 154
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 244 SVTRHQAHAHPPTMVRFVVGPKQPPETIS 158
S+T Q+H++PPT V P PPE ++
Sbjct: 152 SLTASQSHSNPPTPAAPTVPPPPPPEEVN 180
>At5g54100.1 68418.m06736 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 401
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 429 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 194 VMQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDI 248
>At4g27585.1 68417.m03962 band 7 family protein similar to
stomatin-like protein [Zea mays] GI:7716464; contains
Pfam profile PF01145: SPFH domain / Band 7 family
Length = 411
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 429 VLQTLEGHLRAILGTLTVEEVYKDRDQFAGLVREVAAPDVGRMGIEILSFTIKDV 593
V+Q + +R+ LG +T+++ +++RD + E G++ L + I+D+
Sbjct: 151 VVQLAQTTMRSELGKITLDKTFEERDTLNEKIVEAINVAAKDWGLQCLRYEIRDI 205
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/56 (19%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 184 PKQPPETISASLGPTVWMLPILNPFTVTFTIHTLHF--TTKTITNLFNLPKNQKKK 23
P QPP + +++ T+++L + F F+++ HF ++ + ++ ++P+ + +
Sbjct: 39 PPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHFADSSSSTVDISSMPRTRSSR 94
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 392 VPGQDRQRD*HDC-PANVGGSFASYSRNSYSRRGVQRQGPIRGLGTRSGCAGRRKNG 559
+P RQR + P +GG F+SY S R G R G GRR G
Sbjct: 89 LPTGPRQRSEEEMQPGRLGGGFSSYGGRSGGRIGRDRDDSDGSWSGGGGGGGRRPYG 145
>At2g38570.1 68415.m04738 expressed protein ; expression supported
by MPSS
Length = 302
Score = 28.3 bits (60), Expect = 4.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 42 GKLNKFVIVLVVKCSVCIVKVTVKGFKMGNIHT 140
G+ +F++ +V+ +C+V T+K GN+ T
Sbjct: 164 GESERFLLTDIVRVLLCLVSATLKVVSFGNVFT 196
>At2g17120.1 68415.m01976 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain; supporting cDNA
gi|16226688|gb|AF428464.1|AF428464
Length = 350
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/81 (23%), Positives = 34/81 (41%)
Frame = -2
Query: 511 NWSLSLYTSSTVRVPRIARK*PSNVCRTVMLISLTVLPRNCSQAVVRSSSSFMILHWATP 332
NW+LS +SS ++ P + C +L + PR+C A + + F A P
Sbjct: 258 NWTLSCQSSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTASPACP 317
Query: 331 VTVSGTPWAVSTYSHIGFNVI 269
+ +A + S F ++
Sbjct: 318 DSAGPDNYASTLSSSFNFVIV 338
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 72 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 251
V+ C C+V V + N + P E I +G P+ K +VGG VTDV
Sbjct: 1044 VIYCLRCLVNVDIPL----NQGCLAPVEIRIPAGSFLSPSEKAAVVGGNVLTSQRVTDVV 1099
Query: 252 RISLEVMTLNPMC 290
+ + + C
Sbjct: 1100 LTAFQACACSQGC 1112
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -2
Query: 580 VKDRISIPILPTSGAATSRTKPANWSLSLYTSSTVRVPRIARK*PSNVCRT 428
+K RI + + + S T P + SL L S+ PR++++ C T
Sbjct: 8 LKQRIRQDLAESLSVSVSETNPQSQSLKLLLDSSSHKPRLSKREKRRNCET 58
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 473 SSENSSQMTLQRLQDSHVNLFDGLAQELLAGSCEKFVFVHDLALGDS 333
++ENSS + L ++QDSH + D + ++ EK + D G+S
Sbjct: 832 NAENSSDVILLQVQDSHKSPLDESVDQEISKEVEKTELLKDFC-GES 877
>At1g30360.1 68414.m03712 early-responsive to dehydration stress
protein (ERD4) nearly identical to ERD4 protein
(early-responsive to dehydration stress) [Arabidopsis
thaliana] GI:15375406; contains Pfam profile PF02714:
Domain of unknown function DUF221
Length = 724
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 504 DQFAGLVREVAAPDVGRMGIEILSFTIKDVYDDVQY 611
+QFA LVR++ AP G+ E + +++Y + Y
Sbjct: 190 EQFAILVRDMPAPPDGQTQKEFIDSYFREIYPETFY 225
>At5g01920.1 68418.m00111 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 495
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 184 PKQPPETISASLGPTVWML 128
P PPE I+A L P +W L
Sbjct: 363 PSPPPEPIAALLSPILWQL 381
>At3g46980.2 68416.m05102 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 469
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 96 VKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLV 239
V + + GF++GN+ + + L+ GG +GP I G + W LV
Sbjct: 241 VGIAMAGFQLGNVVGLMLSPILMSQGGIYGPF---VIFGLSGFLWLLV 285
>At3g46980.1 68416.m05101 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 533
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 96 VKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLV 239
V + + GF++GN+ + + L+ GG +GP I G + W LV
Sbjct: 241 VGIAMAGFQLGNVVGLMLSPILMSQGGIYGPF---VIFGLSGFLWLLV 285
>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter [Arabidopsis thaliana] GI:2576361; contains
Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 479
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 45 KLNKFVIV---LVVKCSVCIVKVTVKGFKMGNIH 137
KL ++IV L+V+ SVCIV + G + N+H
Sbjct: 135 KLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVH 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,663,455
Number of Sequences: 28952
Number of extensions: 338577
Number of successful extensions: 1043
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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