Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30274
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    25   0.57 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    25   0.57 
AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16 pro...    24   1.3  
AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3 prot...    24   1.3  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    23   1.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.1  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 385 RHWRSPPWTRVHNETLR*GKGDLAPDAYLGKP 480
           R W SPP  R  ++  R  +G L    +LG P
Sbjct: 123 REWSSPPDARAASDAAR--RGVLYSSVFLGSP 152


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 385 RHWRSPPWTRVHNETLR*GKGDLAPDAYLGKP 480
           R W SPP  R  ++  R  +G L    +LG P
Sbjct: 279 REWSSPPDARAASDAAR--RGVLYSSVFLGSP 308


>AY873915-1|AAW67571.2|  384|Tribolium castaneum chitinase 16
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 DVILGITEAYKKDTHPKKVNLGVGAY 187
           +V  GI     +   P K+NLG+G+Y
Sbjct: 240 NVAAGIQYWLDEGAPPSKINLGLGSY 265


>AY873914-1|AAW67570.1|  384|Tribolium castaneum chitinase 3
           protein.
          Length = 384

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 110 DVILGITEAYKKDTHPKKVNLGVGAY 187
           +V  GI     +   P K+NLG+G+Y
Sbjct: 240 NVAAGIQYWLDEGAPPSKINLGLGSY 265


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 110 DVILGITEAYKKDTHPKKVNLGVGAY 187
           +V  GI     +   P K+NLG+G Y
Sbjct: 239 NVAAGIQYWLDEGAPPSKINLGLGTY 264


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +2

Query: 194 DEGKPFVLPSVRKAEEILHSRGLNHEYAPISG 289
           D+GK F   S  K   I      NH+   I G
Sbjct: 253 DQGKKFAYNSTVKVAVIYGGTSTNHQRGRILG 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,907
Number of Sequences: 336
Number of extensions: 4827
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)