Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30274
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   165   4e-42
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   122   4e-29
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   3.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    27   3.3  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   3.3  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    25   7.7  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    25   7.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   7.7  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  165 bits (402), Expect = 4e-42
 Identities = 80/161 (49%), Positives = 107/161 (66%)
 Frame = +2

Query: 83  WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 262
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 263 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAKA 442
           + EYAPI+G  ++     KLA+G+    IK++   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 443 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQG 565
           K I++  PTWGNH  + +   L  K Y+Y+DP T G D++G
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKG 198



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 592 PKVPLFLLHACAHNPTGVDPKPNDWEQL 675
           P   + LLHACAHNPTGVDP    W+ +
Sbjct: 207 PDGSIILLHACAHNPTGVDPTKAQWDDI 234


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  122 bits (295), Expect = 4e-29
 Identities = 60/162 (37%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
 Frame = +2

Query: 89  NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 265
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 266 HEYAPISGEATYTDAVAKLAFGEDSPVIKNKSNCTVQTLSGTGALRLGLEFITKHYAK-- 439
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 440 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLQG 565
              +++  PTW  H  +   L +    Y Y+D K   FD +G
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEG 169



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +1

Query: 523 PLLRSQDQWFRFAGEHSRIYQKFPKVPLFLLHACAHNPTGVDPKPNDW 666
           P   ++++ F + G  S I +  P+  +FLLHACAHNPTG+DP    W
Sbjct: 156 PYWDAKNRSFDYEGMLSTI-KSAPEGSIFLLHACAHNPTGIDPTREQW 202


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 529 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 413
           +T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 80  LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 241 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 134
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 205 FSLIISICS-NTKIYFFRMCVLLV 137
           F+L+  +CS N+K++FFR  VL +
Sbjct: 564 FALVDELCSLNSKLWFFRKSVLTI 587


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 241 FFCLSDRRQNKWFSLIISICSNTKIYFFRMCVLLVC 134
           F C+ D R N   +LI S CS +   FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 498 PSTCRTRNTVTSIPRPMVSICRGALEDISKIPEGSII 608
           P+T    ++V +IP    SI R ALE I ++    ++
Sbjct: 147 PNTSSVPSSVENIPPSDQSIVRAALETIQRVTRSLVL 183


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 481 PANLQHPQLAAQEIPLLRSQDQWFRFAGEHSRIYQK 588
           P  ++ P+L A ++ L  S  QW+     HS  ++K
Sbjct: 211 PWRVESPELHAVQVHLGGSSLQWYVIPSAHSESFKK 246


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -2

Query: 460 REPDLLCLSVVFRYELESKAESASAGQCLYSTVAL--IFDDRAVFSKSQFSYSISICGLT 287
           R P+L  L +  R   E+     S     YST +L   F D++V S S  S S ++    
Sbjct: 2   RRPNLDRLRLKSRQGFETSVSKPSTPS--YSTYSLSPTFSDKSVLSPSTMSDSYALSSTY 59

Query: 286 TDGS 275
           T GS
Sbjct: 60  TAGS 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,491
Number of Sequences: 5004
Number of extensions: 73355
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)