Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30274
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.7  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 210 NGFPSSSLYAPTPRFTFLGCVSFLYASVM 124
           N  P  S Y       FLGC  FL+A+++
Sbjct: 283 NSLPKVS-YIKASEIWFLGCTIFLFAAMV 310


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 97  DGSARCNLRHYRSIQEG 147
           DG AR N+ H++ I+ G
Sbjct: 535 DGPARYNIIHFKQIEPG 551


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 331 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 227
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 513 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 547


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 331 SKSQFSYSISICGLTTDGSILMIESSTMENFFCLS 227
           S S  SY   IC LT    +  + + T  N F LS
Sbjct: 481 SLSDGSYFGEICLLTNARRVASVRAETYCNLFSLS 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,395
Number of Sequences: 438
Number of extensions: 5358
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)