Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30273
         (458 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659           27   7.3  
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846...    27   9.6  
01_01_0733 - 5715719-5715785,5715908-5715966,5717844-5717884,571...    27   9.6  

>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
          Length = 175

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 262 KWWSFTEIFSVDFLEDPEKLRPATLFYFPTFVRFH 366
           +WW F     V  +     L P  LF  PT V FH
Sbjct: 12  RWWRFLPRRLVSTVMPSVTLLPRILFLHPTTVMFH 46


>04_02_0007 +
           8464923-8465155,8466037-8466591,8466645-8467662,
           8467768-8468485,8468651-8468937
          Length = 936

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 352 MWENKTKSLDVTSRDPPKSLLKKSQ 278
           +WE  TKS  V S   PK L  +S+
Sbjct: 12  LWERSTKSQKVASTSDPKPLTNESE 36


>01_01_0733 -
           5715719-5715785,5715908-5715966,5717844-5717884,
           5718086-5718134,5718427-5718559,5719303-5719384,
           5719990-5720472,5720612-5721024,5721260-5721419,
           5721541-5721665,5721756-5721811,5721831-5721889,
           5722069-5722180,5722952-5723032
          Length = 639

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 311 PR-SYVQRLCFIFPHLCAFTDIKQLINNGYYTF 406
           PR S V   C I PH+  FT+IK    NG  T+
Sbjct: 601 PRLSLVYFSCRIVPHVIRFTNIKINTENGKITY 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,054,485
Number of Sequences: 37544
Number of extensions: 135767
Number of successful extensions: 211
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)