Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30273
         (458 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC058284-1|AAH58284.1|  166|Homo sapiens anterior gradient homol...    30   3.3  
AY359065-1|AAQ89424.1|  166|Homo sapiens MLHS642 protein.              30   3.3  
AY069977-1|AAL55402.1|  166|Homo sapiens anterior gradient prote...    30   3.3  
Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit...    29   7.7  
Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit...    29   7.7  
U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit...    29   7.7  
CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.               29   7.7  
BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DN...    29   7.7  
BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DN...    29   7.7  

>BC058284-1|AAH58284.1|  166|Homo sapiens anterior gradient homolog
           3 (Xenopus laevis) protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 YVQRLCFIFPHLCAFTDIKQLINNGYYTFEPEE 418
           YV R+ F+ P L    DI    +N  YT+EP +
Sbjct: 115 YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRD 147


>AY359065-1|AAQ89424.1|  166|Homo sapiens MLHS642 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 YVQRLCFIFPHLCAFTDIKQLINNGYYTFEPEE 418
           YV R+ F+ P L    DI    +N  YT+EP +
Sbjct: 115 YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRD 147


>AY069977-1|AAL55402.1|  166|Homo sapiens anterior gradient protein
           3 protein.
          Length = 166

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 YVQRLCFIFPHLCAFTDIKQLINNGYYTFEPEE 418
           YV R+ F+ P L    DI    +N  YT+EP +
Sbjct: 115 YVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRD 147


>Z47729-1|CAA87658.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


>Z47728-1|CAA87657.1|   32|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 32

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


>U37690-1|AAA91459.1|   67|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


>CR536565-1|CAG38802.1|   67|Homo sapiens POLR2L protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


>BC018649-1|AAH18649.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


>BC005903-1|AAH05903.1|   67|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide L, 7.6kDa protein.
          Length = 67

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I V+   CGKI  ++W   LG+LQ  Y
Sbjct: 2   IIPVRCFTCGKIVGNKWEAYLGLLQAEY 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,223,837
Number of Sequences: 237096
Number of extensions: 764218
Number of successful extensions: 1089
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3872123864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)