Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30273
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical pr...    31   0.30 
AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.    27   8.7  
AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.    27   8.7  

>Z29094-2|CAA82339.3|  590|Caenorhabditis elegans Hypothetical
           protein C07A9.4 protein.
          Length = 590

 Score = 31.5 bits (68), Expect = 0.30
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = -3

Query: 282 LSK*PPFYLDYISYPSY--HLISFYLISSQLINV 187
           L K PPFY   ISY  +   +   YLISS+++NV
Sbjct: 420 LHKEPPFYKSLISYAGFLMSIAWIYLISSEVVNV 453


>AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical
           protein Y37E3.3 protein.
          Length = 67

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 375 LISVKAHKCGKIKQSRWT*LLGILQKVY 292
           +I ++   CGK+   +W   LG LQ  Y
Sbjct: 2   IIPIRCFTCGKVIGDKWETYLGFLQSEY 29


>Z70208-4|CAC42306.1|  879|Caenorhabditis elegans Hypothetical
           protein F54B11.3b protein.
          Length = 879

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  MSLYKRVGSFFKGCYDLL 93
           +S  K +G+FF GCY+ L
Sbjct: 647 LSANKSIGTFFNGCYETL 664


>Z70208-3|CAA94142.2| 1111|Caenorhabditis elegans Hypothetical
           protein F54B11.3a protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  MSLYKRVGSFFKGCYDLL 93
           +S  K +G+FF GCY+ L
Sbjct: 647 LSANKSIGTFFNGCYETL 664


>AF200707-1|AAF15884.1|  879|Caenorhabditis elegans UNC-84B protein.
          Length = 879

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  MSLYKRVGSFFKGCYDLL 93
           +S  K +G+FF GCY+ L
Sbjct: 647 LSANKSIGTFFNGCYETL 664


>AF200706-1|AAF15883.1| 1111|Caenorhabditis elegans UNC-84A protein.
          Length = 1111

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 40  MSLYKRVGSFFKGCYDLL 93
           +S  K +G+FF GCY+ L
Sbjct: 647 LSANKSIGTFFNGCYETL 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,954
Number of Sequences: 27780
Number of extensions: 136585
Number of successful extensions: 324
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)