Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30272
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.5  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 72  IYYFI*ELFLFVCL 113
           IYYF+  LF  +C+
Sbjct: 133 IYYFVVPLFFLLCI 146


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 PPQVTGTMNGHSTSHS 168
           PP++TG+ NG   + S
Sbjct: 41  PPELTGSTNGDGGARS 56


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 121 PPQVTGTMNGHSTSHS 168
           PP++TG+ NG   + S
Sbjct: 197 PPELTGSTNGDGGARS 212


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,821
Number of Sequences: 336
Number of extensions: 2489
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)