Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30272
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    26   4.5  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   5.9  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    26   5.9  

>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 144 EWPLNLSLRGHSQKAYTDTRHQHYWQPYAV*GTEADTFY 260
           EWP   SLR  S   +T   +     PY+   T+A  +Y
Sbjct: 111 EWPYFRSLRRESMLYHTSGSYPESQPPYSSYSTDAPHYY 149


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 146 FIVPVTCGGTL*TNKQKQFLD 84
           F++P+T GG   TNK+  F++
Sbjct: 151 FVIPLTIGGLAFTNKRNTFVN 171


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 170 WTLAKGLHRYQTSTLLATIRRIRYGSRHFLF*IIT 274
           W  +  LH      L+AT+R  +  SR F F +IT
Sbjct: 553 WKQSLELHTEPIDLLMATVRPAQSVSRKFCFEVIT 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,375
Number of Sequences: 5004
Number of extensions: 40520
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)