Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30272
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.52 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.4  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 136 GTMNGHSTSHSVDTRKRLTPIP 201
           G++NG+ +S   D RK+  P P
Sbjct: 159 GSLNGYGSSDGCDARKKKGPTP 180


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 103 LFVYSVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVRKQTLFILNYNT 276
           L V+S P     T+N  S     D +  +  I  +N+T +  P+  R     + N+ T
Sbjct: 381 LTVHSFP----STLNIPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATLAQLHNFTT 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,016
Number of Sequences: 438
Number of extensions: 2973
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)