Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30270
(463 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 1.8
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 27 1.8
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 27 1.8
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 27 1.8
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 27 1.8
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 26 3.2
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 25 4.3
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 4.3
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 25 5.6
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 5.6
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 25 5.6
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 7.4
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 24 9.8
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 24 9.8
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 24 9.8
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 1.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 203 RQLISDRQYGF--RHGRSAGDLLVYLTHRWAEALESKGEALAVSLDI 337
RQ R+ GF RH R G + + + + +A + G A AVS DI
Sbjct: 355 RQSRMSRRLGFTLRHMRINGSSVSFYPNPYTDATDIAGNATAVSEDI 401
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 350 DRVWHRALLSKLPSYGIPEGLCKWIAS 430
D V A S+LP YGI GL W A+
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAA 98
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 350 DRVWHRALLSKLPSYGIPEGLCKWIAS 430
D V A S+LP YGI GL W A+
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAA 98
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 425 RSTCRDPRGFRKMVASTEVPYARPCRRPSRYQGSQQEPRPCSPR 294
R RD R R+ S Y+ P RR RY+ ++ R SPR
Sbjct: 37 RRNYRDERSSRRYEDSQRRDYS-PARRRDRYERHRESVREESPR 79
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 206 QLISDRQYGFRHGR----SAGDLLVYLTHRWAEALESKG 310
QL D +Y +R G S DL+ YLT RW E G
Sbjct: 35 QLNEDGEYIYRTGDLVLGSVDDLISYLTPRWRERFVING 73
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.8 bits (54), Expect = 3.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Frame = +2
Query: 356 VWHRALLSKLPSYGIPEGLCKWIASLFW 439
VW ++ + Y +P+G+ W S W
Sbjct: 378 VWDHRMVDSVLKYPVPKGVPPWAMSACW 405
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 4.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 5 ALTRLYRISYCANRVPSSWKTA-HVHPIPKKGDRSDPSSYRPIAIT 139
+LTR+ + + + + K +V PKKG DPS+ P +T
Sbjct: 17 SLTRVAHLVFANSHESNDLKMVENVSSTPKKGVLEDPSTLTPEVVT 62
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 272 LTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKL 385
+ ++W E ES AL SLD + W + LS+L
Sbjct: 606 IVNKWKEGKESNLRALLASLDTILWPECRWQKVSLSEL 643
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 2 PALTRLYRISYCANRVPSSWKTAHVHPIPKKGDRSDP 112
P + + + A +VP W+ V+PI K G + P
Sbjct: 58 PEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIP 94
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 5.6
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 390 DGSFDRSALCQTLSKAFAISRLTARASPLLSKASAHL*VRYTR 262
+G+F +L L+ ISRL+A A+P L+ S H+ R ++
Sbjct: 377 EGAFINKSL---LTLGTVISRLSAAANPSLTSNSGHIPYRESK 416
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 382 LRQKCPMPDPVEGLRDIKAHSKSLALALQ 296
LRQ PM + G+R K SKS LA+Q
Sbjct: 453 LRQSYPMTIRLLGVRATKLVSKSRCLAMQ 481
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 24.6 bits (51), Expect = 7.4
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +2
Query: 278 HRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASLFWMGG 448
++W + +ALA +IA+A H + +S +P +G C + +GG
Sbjct: 747 NKWWSKADDPFQALAACFEIAEAVRSGDHESYISHIPIQ--QDGTCNGLQHYAALGG 801
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 24.2 bits (50), Expect = 9.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 87 GIGWTWAVFHEDGTL 43
G GW W + +DG+L
Sbjct: 146 GSGWAWLIVDKDGSL 160
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 137 TSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRS 250
T +L IIN+ L K ++++I D YG + S
Sbjct: 252 TDILDNKCSWIINLALAKCTPEQRVILDDNYGRKDSES 289
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 368 PYARPCRRPSRYQGSQQEPRPCSPRLQPT 282
PY+RP + S QQ+ + +PRL+PT
Sbjct: 533 PYSRPLQSQSTGI-LQQQQQQSAPRLEPT 560
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,558
Number of Sequences: 5004
Number of extensions: 42315
Number of successful extensions: 101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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