Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30270
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    65   3e-11
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    61   3e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    61   3e-10
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    61   3e-10
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    35   0.025
U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    34   0.057
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    32   0.17 
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    32   0.23 
AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical ...    29   1.6  
AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical ...    29   1.6  
AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    27   4.9  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
 Frame = +2

Query: 8   LTRLYRISYCANRVPSSWKTAHVHPIPK-KGDRSDPSSYRPIAITSLLSKVMERIINIQL 184
           L  LY +S   N +P  WK A+V  IPK K D +  SSYRPI++ S ++K++E+ I    
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLSPIAKLLEKAI---- 422

Query: 185 LKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKG---EALAVSLDIAKAFDR 355
           LK +++       Q+GF+   S    ++ +T+     L  K     A+   LD+  AFD+
Sbjct: 423 LKRIKNSIESPAHQHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDK 482

Query: 356 VWHRALLSKL-PSYGIPEGLCKWIAS 430
           V  + L + L  + GI   +  W+ +
Sbjct: 483 VPTKKLCNDLMEAQGIEPKIKLWLGN 508


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 39/120 (32%), Positives = 58/120 (48%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLIS 217
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L++ Q + 
Sbjct: 425 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV- 483

Query: 218 DRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYG 397
             Q GFR   S  D +  L        E +     V +D  KAFD V H+A+   L   G
Sbjct: 484 -EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQG 542


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 39/120 (32%), Positives = 58/120 (48%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLIS 217
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L++ Q + 
Sbjct: 596 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV- 654

Query: 218 DRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYG 397
             Q GFR   S  D +  L        E +     V +D  KAFD V H+A+   L   G
Sbjct: 655 -EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQG 713


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 39/120 (32%), Positives = 58/120 (48%)
 Frame = +2

Query: 38  ANRVPSSWKTAHVHPIPKKGDRSDPSSYRPIAITSLLSKVMERIINIQLLKYLEDRQLIS 217
           +  VP  WKT+    I KKGDR +  +YRPI +  +L KV  + +  ++ + L++ Q + 
Sbjct: 335 SRNVPKPWKTSKTTLIFKKGDRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQPV- 393

Query: 218 DRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYG 397
             Q GFR   S  D +  L        E +     V +D  KAFD V H+A+   L   G
Sbjct: 394 -EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQG 452


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 35.1 bits (77), Expect = 0.025
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = +2

Query: 8   LTRLYRISYCANRVPSSWKTAHVHPIPKKG 97
           L+ +Y+ S+  +++P  WK A + PIPKKG
Sbjct: 809 LSIIYKQSFADSKIPDCWKKAIIIPIPKKG 838


>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +2

Query: 284 WAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWI 424
           W ++++   +   + LD +KAFDR+ H  LL KL S    + L  W+
Sbjct: 4   WTKSIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWV 50


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 37/144 (25%), Positives = 55/144 (38%), Gaps = 2/144 (1%)
 Frame = +2

Query: 8    LTRLYRISYCANRVPSSWKTAHVHPIPKKGDR--SDPSSYRPIAITSLLSKVMERIINIQ 181
            L+R+ R  +     P SW    V P P K      DP +Y           VME++I   
Sbjct: 797  LSRILRNIFETEDYPESWNHCIVIPDPPKIRELIRDPKNYALNYYFDPFLGVMEKVICDF 856

Query: 182  LLKYLEDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVW 361
            L K  E+    S R     H +            + E +E+      +   ++ AFD+V 
Sbjct: 857  LQK--ENEHKFSPRTKDPTHCK------------YEEYVEAHKRVDLIHFKLSTAFDKVP 902

Query: 362  HRALLSKLPSYGIPEGLCKWIASL 433
            H  L+SKL  + +   L  W   L
Sbjct: 903  HEFLISKLNDFNVHPTLRNWFRKL 926


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 341 KAFDRVWHRALLSKLPSYGIPEGLCKW 421
           KAFD+V H  LL KL  +GI    C W
Sbjct: 2   KAFDQVNHSLLLQKLHDFGINPLFCNW 28


>AF016443-7|AAK68184.1|  285|Caenorhabditis elegans Hypothetical
           protein C17E7.9a protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 337 REGLRQGLA*GTSVEATILRNPR 405
           RE + +GLA GT V  T+ R PR
Sbjct: 246 RENVHEGLADGTQVTTTVFRGPR 268


>AF016443-6|AAK68185.1|  257|Caenorhabditis elegans Hypothetical
           protein C17E7.9b protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 337 REGLRQGLA*GTSVEATILRNPR 405
           RE + +GLA GT V  T+ R PR
Sbjct: 218 RENVHEGLADGTQVTTTVFRGPR 240


>AC024771-2|AAK70659.1|  697|Caenorhabditis elegans Hypothetical
           protein Y40B10A.4 protein.
          Length = 697

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 374 EVPYARPCRRPSRYQGSQQE----PRPCSPRLQP 285
           E P  R  R+PSR+  S  +    P PCSP   P
Sbjct: 340 ENPPVRDSRKPSRFSASHADKKHYPAPCSPDANP 373


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 197  EDRQLISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFD 352
            ED+Q  S R Y   HG + G  + Y    WAE    KGE  + ++ I  + D
Sbjct: 1823 EDQQRTS-RNYFDTHGLAEG--VTYFFSVWAETSAGKGEQRSANVTIGPSKD 1871


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 70  PRPPYPQEG*PVGP 111
           PRPPYP  G PV P
Sbjct: 807 PRPPYPYPGGPVPP 820


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 425 RSTCRDPRGFRKMVASTEVPYARPCRRPSRYQGSQQEPRPCS 300
           R+   DPR   + +A   VPY+R  +R   Y  S+  P+P S
Sbjct: 346 RTQWEDPRFENENIAGPAVPYSRDYKRKVEYLRSRL-PKPNS 386


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,164
Number of Sequences: 27780
Number of extensions: 247617
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)