Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30270
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20520.1 68417.m02991 hypothetical protein                          31   0.38 
At2g43260.1 68415.m05377 F-box family protein / S locus-related ...    27   4.7  
At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containi...    27   4.7  

>At4g20520.1 68417.m02991 hypothetical protein
          Length = 376

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 209 LISDRQYGFRHGRSAGDLLVYLTHRWAEALESKGEA--LAVSLDIAKAFDRVWHRALLSK 382
           LI   Q  F  GR + D +V++          KG    + + LD+ KA+DR+    L   
Sbjct: 12  LIGPAQASFIPGRVSTDNIVFVQEAVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDYLEDT 71

Query: 383 LPSYGIPE 406
           L S G PE
Sbjct: 72  LISAGFPE 79


>At2g43260.1 68415.m05377 F-box family protein / S locus-related
           weak similarity to S locus F-box (SLF)-S2 protein
           [Antirrhinum hispanicum] GI:13161526; contains TIGRFAM
           TIGR01640: F-box protein interaction domain
          Length = 420

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 32  YCANRVPSSWKTAHVHPIPKKGD 100
           Y  N VP   K +H HP PK  D
Sbjct: 352 YVENLVPLPLKPSHPHPTPKNSD 374


>At1g35730.1 68414.m04441 pumilio/Puf RNA-binding domain-containing
           protein
          Length = 564

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +2

Query: 119 YRPIAITSLLSKVMERIINIQLLKYLEDRQLISDRQYGFRHGRSAGDLL 265
           + P   +SLLS   E++       YLED  LI    YG    +S  DL+
Sbjct: 197 FYPEEDSSLLSPFHEKVSGKLGASYLEDTVLIGQGSYGKMSPKSNNDLV 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,261,076
Number of Sequences: 28952
Number of extensions: 247868
Number of successful extensions: 576
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)