Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30268
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    25   0.85 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.6  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 92  LSIKCSKTEKSFNICVFLEKQTIRHC 15
           L++K +  + S + C+FLE     HC
Sbjct: 52  LNLKITDLDPSADYCLFLEMTLAHHC 77


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 602 LHFYLSWLKDQLKTNNNDYIQSVARCLQ 685
           LHF+ SWLK + K    + I+ +   LQ
Sbjct: 414 LHFHASWLKSK-KEFKEELIKFIEEMLQ 440


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 602 LHFYLSWLKDQLKTNNNDYIQSVARCLQ 685
           LHF+ SWLK + K    + I+ +   LQ
Sbjct: 421 LHFHASWLKSK-KEFKEELIKFIEEMLQ 447


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 500 LNLLNRQDEF-VQHMTARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDY 658
           LN LN+  E     +T   +  L  W   L +K+D  +Y+S+  D  K N+  Y
Sbjct: 391 LNPLNKGTEADSSFVTLPQLHSLDEWDDTLKEKADFQYYVSY--DFYKMNHPVY 442


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,303
Number of Sequences: 336
Number of extensions: 3566
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)