Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30268
(750 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family ... 73 2e-13
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 37 0.012
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 37 0.012
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP... 33 0.27
At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containi... 32 0.35
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 28 5.8
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 28 5.8
At5g02100.1 68418.m00131 oxysterol-binding family protein simila... 28 5.8
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein... 28 5.8
>At3g42050.1 68416.m04311 vacuolar ATP synthase subunit H family
protein identical to probable vacuolar ATP synthase
subunit H (EC 3.6.3.14)(V-ATPase H subunit) (Vacuolar
proton pump H subunit) (Vacuolar proton pump subunit
SFD) SP:Q9LX65 from [Arabidopsis thaliana]; contains
Pfam PF03224: V-ATPase subunit H
Length = 441
Score = 73.3 bits (172), Expect = 2e-13
Identities = 44/197 (22%), Positives = 101/197 (51%), Gaps = 13/197 (6%)
Frame = +2
Query: 197 QIRASEIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQK---DLPDKNPDACAEVFLNL 367
++ ++ + I W++Y+ +++++ + + D++ + L D++ A +F+++
Sbjct: 5 ELSIEQVLKRDIPWETYMNTKLVSAKGLQLLRRYDKKPESARAQLLDEDGPAYVHLFVSI 64
Query: 368 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLNLLNRQDEFVQHMT 544
L I K+ T++Y+L LI ++LS + +R ++F + + + ++PFL LL + + F+Q +
Sbjct: 65 LRDIFKEETVEYVLALIYEMLSANPTRARLFHDESLANEDTYEPFLRLLWKGNWFIQEKS 124
Query: 545 ARIIAKLACWHPQLMD-------KSDLHFYLSWLKDQLKTNNNDY--IQSVARCLQMMLR 697
+I+A + P+ + L + WL QLK ++ + CL +L+
Sbjct: 125 CKILAWIISARPKAGNAVIGNGIDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLK 184
Query: 698 IDEYRFAFLSVDGISTL 748
R +F+ DG+ L
Sbjct: 185 EPVVRSSFVQADGVKLL 201
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 332 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 505
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 47 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 103
Query: 506 LLNRQDEFVQHMTARIIAKL 565
L +E+++ +T R + ++
Sbjct: 104 NLQHPNEYIRGVTLRFLCRM 123
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/80 (23%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +2
Query: 332 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 505
N + ++F+ ++ ++ S+DHTIQ +L+L +++ + S+ K+ E + Q N
Sbjct: 70 NGETIPQLFITIIRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMIL---ICQNLRN 126
Query: 506 LLNRQDEFVQHMTARIIAKL 565
L +E+++ +T R + ++
Sbjct: 127 NLQHPNEYIRGVTLRFLCRM 146
>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
epsilon subunit) {Homo sapiens}; contains Pfam profile:
PF01602 Adaptin N terminal region
Length = 938
Score = 32.7 bits (71), Expect = 0.27
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 245 YLQSQMITQRDHDFIVNLDQRGQKDL-PDKNPDACAEVFLNLLTHISKDHTIQYILVLID 421
YL + DHD I+ + QKDL D CA LN + + + TI +L +
Sbjct: 106 YLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLVVCAA--LNAICRLINEETIPAVLPQVV 163
Query: 422 DILSEDKSRVK 454
++L+ K V+
Sbjct: 164 ELLNHQKEAVR 174
>At4g20740.1 68417.m03014 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 727
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -3
Query: 724 EESKAVFIDTQHHLQTPGHRLDIVVVIGLELIFKPGEIEVQITFVHQLR 578
EE A+ +D + L+T GH V I +E ++K G+I+ ++ +++R
Sbjct: 486 EEKNAMALDVFYILKTKGHGSVSVYNILMEALYKMGDIQKSLSLFYEMR 534
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 542 TARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAF 721
T RI KL W+P + H WL + + YI+ L + + + E +A
Sbjct: 320 TGRISFKLYDWNPAEFPRRLRHQIFQWLAN-MPVELEGYIRPGCTILTVFIAMPEIMWAK 378
Query: 722 LSVDGISTL 748
LS D ++ L
Sbjct: 379 LSKDPVAYL 387
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +2
Query: 542 TARIIAKLACWHPQLMDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAF 721
T RI KL W+P + H WL + + YI+ L + + + E +A
Sbjct: 320 TGRISFKLYDWNPAEFPRRLRHQIFQWLAN-MPVELEGYIRPGCTILTVFIAMPEIMWAK 378
Query: 722 LSVDGISTL 748
LS D ++ L
Sbjct: 379 LSKDPVAYL 387
>At5g02100.1 68418.m00131 oxysterol-binding family protein similar
to SWH1 [Saccharomyces cerevisiae] GI:402658; contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 453
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +2
Query: 488 WQPFLNLLNRQDEFVQHMTARIIAKLACWHPQL 586
W+PF +L E H IA+ C HP +
Sbjct: 142 WKPFNPILGETYEMTNHNGINFIAEQVCHHPPM 174
>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
contains Pfam profile: PF01068 ATP dependent DNA ligase
domain
Length = 1417
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = -2
Query: 617 RDRSANHFCPSAAGASKLAWQ*CEQSCAGQIHPDGSANSGRAAKRCQRISSHE 459
R+ +H + + + C ++C+ Q S NSG A C + S+ E
Sbjct: 685 REIPGDHAGERGLSSKTIQYPKCSEACSSQEDKKASENSGHAVNICVQTSAEE 737
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,929,791
Number of Sequences: 28952
Number of extensions: 308638
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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