Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30267
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0570 - 17242362-17242694,17242714-17242758                       29   2.9  
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     28   6.7  

>04_03_0570 - 17242362-17242694,17242714-17242758
          Length = 125

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 315 CGARIG--DVPVFGTNGSICGRHIAYVVGR-IGTHCSVRIEHGRR 190
           CG RI   + P    +GS+CGR + + V R +G+    R   G R
Sbjct: 41  CGQRIWRREGPRLVNSGSVCGRRVVWAVARLVGSRSGCRRRMGSR 85


>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -1

Query: 501  ESSGPGTSESFSCIITRRITGACVIRLAKGRVWIVKSIIRTSVCGFCECTIYSYAFDVTG 322
            E +G  + +S   + TR ++  C+  +   R W  K   R +VCG   C    YA   +G
Sbjct: 866  EQAGIHSGDSACSLPTRTVSAKCLDII---RSWTTKLAKRLNVCGLMNC---QYAITTSG 919

Query: 321  TI 316
             +
Sbjct: 920  EV 921


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,970
Number of Sequences: 37544
Number of extensions: 391823
Number of successful extensions: 970
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)