Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30267
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.026
SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)                30   1.7  
SB_242| Best HMM Match : AFP (HMM E-Value=0.45)                        29   3.9  
SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)                 29   5.2  
SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)                   29   5.2  
SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7)                      29   5.2  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)                    29   5.2  
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)                   28   9.0  

>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 33/114 (28%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
 Frame = +1

Query: 70  CTQTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDPXXXXX 249
           CT+   G +AD  +  C  Y  C     +  +   N  CP+   FN    MC  P     
Sbjct: 316 CTERQDGNYADSSN--CNLYITC-----SNGFTIANRHCPTGLAFNEAIGMCDYPSNVPG 368

Query: 250 XXXXXXXXXXXE--DGYIADPSSTNCSSYIECVGINGTFTETTYTCPDNTFYDP 405
                      E  DG   D  S NC  +I C   NG       TCP  T +DP
Sbjct: 369 CSGSSGSGFCHEKSDGNYKD--SGNCHGFIMC--SNGHTYH--MTCPGQTNFDP 416



 Score = 31.9 bits (69), Expect = 0.55
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 76  QTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDP 234
           Q   G  A+  D   Q+   C    S  +++ Y+  CP    FNP T  C +P
Sbjct: 437 QNDGGFCAERSDGDYQDPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNP 489



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 2/116 (1%)
 Frame = +1

Query: 70  CTQTGAGRFADDDDTTCQNYTLCVYDTSTLDYLFYNYQCPSTSVFNPNTAMCTDPXXXXX 249
           C +   G + D  +  C  + +C    +      Y+  CP  + F+P    C D      
Sbjct: 378 CHEKSDGNYKDSGN--CHGFIMCSNGHT------YHMTCPGQTNFDPAKKRCED--YDCS 427

Query: 250 XXXXXXXXXXXEDGYIADPSSTNCSSYIECVGINGTFTETTY--TCPDNTFYDPNT 411
                      + G+ A+ S  +      C G        TY   CP+N  ++P T
Sbjct: 428 GRDVAYLTDQNDGGFCAERSDGDYQDPDACEGFISCSNHITYHMPCPENLRFNPTT 483


>SB_21632| Best HMM Match : Keratin_B2 (HMM E-Value=1.9)
          Length = 137

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = -1

Query: 588 TSIFVLYVCSV*GQHTIIVSL-TSSVRSVCESSGPGTSESFSCIITRRIT--GACVIRLA 418
           TS+F    C++   + II S  T SV  VC  +     E   C+++ R+   GAC + + 
Sbjct: 12  TSLFPRGACAL---YVIIQSTPTWSVCVVCYHTVLSHEERVRCMLSYRLLLRGACALYV- 67

Query: 417 KGRVWIVKSIIRTSVCGFCECTIYSY 340
                I+ S    SVC  C  T+YSY
Sbjct: 68  -----IIPSSPTRSVCVVCYHTVYSY 88


>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
          Length = 147

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +1

Query: 580 YTCPT-----TSVFNPNTRVCTTSYTWYNNLTITS 669
           YTC T     TS     +  CTTSYTW  + T T+
Sbjct: 104 YTCTTSYTSTTSYTCTTSYTCTTSYTWITSYTCTT 138



 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 580 YTCPTTSVFNPNTRVCTTSYTWYNNLTITS 669
           YTC TTS  +  +  CTTSYT   + T T+
Sbjct: 8   YTC-TTSYTSTTSYTCTTSYTSTTSYTSTT 36


>SB_49622| Best HMM Match : E-MAP-115 (HMM E-Value=2.4)
          Length = 313

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 580 IRIVRMFRLRPAHNNSKFDK*CP*CLRIFRPRN 482
           IR+V   +LRP     + DK  P  LRI  PRN
Sbjct: 71  IRLVIPLQLRPGRKGRRGDKRSPWILRIASPRN 103


>SB_44477| Best HMM Match : IBR (HMM E-Value=0.00086)
          Length = 627

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 253 HCIRSWQDRYTLQCSD*TRTSMDIDSCRTNNLKSKYRRRKACSFDKSCHR 104
           HC  +W D + L+CS       +I+     +L+  Y  R   +  + CH+
Sbjct: 491 HCKENWSDHFGLKCS-------EIEKKGEKDLRISYEERMTMAKIRKCHK 533


>SB_35483| Best HMM Match : DRAT (HMM E-Value=4.7)
          Length = 512

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 219 CSVRIEHGRRWTLIVVEQII*SRSIVDAKR-VVLTSRVIVIGKSACSGLRTVDGCLNLPN 43
           C V IE  RR  ++    II  R +V  KR V++  R +VIGK      +  D C   P 
Sbjct: 435 CRVVIEK-RRVVIVKRRLIIGKRRVVTGKRRVIIGKRWVVIGKRRVVIGKRPDSCREAPG 493

Query: 42  A 40
           +
Sbjct: 494 S 494


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 580 YTCPTTSVFNPNTRVCTTSYTWYNNLTITS 669
           YTC TTS  +  +  CTTSYT   + T T+
Sbjct: 164 YTC-TTSYTHTTSYTCTTSYTCTTSYTCTT 192


>SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)
          Length = 442

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -1

Query: 219 CSVRIEHGRRWTLIVVEQII*SRSIVDAKR-VVLTSRVIVIGKSACSGLRTVDGCLNLPN 43
           C V IE  RR  ++    II  R +V  KR V++  R +VIGK      +  D C   P 
Sbjct: 365 CRVVIEK-RRVVIVKRRLIIGKRRVVTGKRRVIIGKRWVVIGKRRVVIGKRPDSCREAPG 423

Query: 42  A 40
           +
Sbjct: 424 S 424


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 13  GIVLILVFCCVWQVQAAVNCTQTGAGRFADDDDTTC-QNYTLCVYDTSTLD 162
           G+V +L+ C +    ++++C     G    +  TTC +   +CV    T+D
Sbjct: 5   GLVALLMVCAMLDSASSLSCHSCAVGVDCTETPTTCDEGKDVCVTVNGTID 55


>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
          Length = 1465

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +2

Query: 374  TLVRIILFTIQTRPFASRITHAPVIRLVIIQLKLSLVPGPEDSQTLRTLLVKLTIIVCWP 553
            T++ II+ TI      +  T   +I ++II + ++++     +  +  +++ L IIVC+P
Sbjct: 967  TIIIIIIITIIITIIITTTTIIIIIIIIIIIIIITIINTTTTTIIIVIIIIILIIIVCFP 1026


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,005,887
Number of Sequences: 59808
Number of extensions: 514542
Number of successful extensions: 1610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)