Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30267
         (735 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.                   30   9.9  
BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical ...    30   9.9  

>D87343-1|BAA23225.1|  297|Homo sapiens DCRA protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 486 GTSESFSCIITRRITGACVIRLAKGRVWIVK-SIIRTSVCGFCECTIYSYAFDVT 325
           G   S +C+IT+ +TG  V+  ++  +  V+  ++R   CG  E     YA D T
Sbjct: 180 GHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAE----GYARDAT 230


>BC110655-1|AAI10656.1|  297|Homo sapiens Down syndrome critical
           region gene 3 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 486 GTSESFSCIITRRITGACVIRLAKGRVWIVK-SIIRTSVCGFCECTIYSYAFDVT 325
           G   S +C+IT+ +TG  V+  ++  +  V+  ++R   CG  E     YA D T
Sbjct: 180 GHLNSTNCVITQPLTGELVVESSEAAIRSVELQLVRVETCGCAE----GYARDAT 230


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,005,432
Number of Sequences: 237096
Number of extensions: 2212163
Number of successful extensions: 4800
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4800
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)