Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30263
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    27   2.4  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    27   3.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   7.5  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    25   7.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.9  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   9.9  

>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1010

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 176  FDKGNNFDLCSAFTFADLAGGLPIFHI---NPNDQRTAQWLSKDLTLLHIYEREHIFG 340
            F+  N+F+  +  T +  +G +  F +   +PND    QWL K  T + I E+  +FG
Sbjct: 837  FEVNNSFNASNVNTNSSFSGPISEFLVELFSPNDDAKQQWLPKK-TYISILEQ--LFG 891


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +2

Query: 167 TTVFDKGNNFDLCSAFTFADLAGGLPIFHINPNDQRTAQWLSKDLTLLHIYEREHIFGKR 346
           T +F  G    L   +    L G +PI   +P      + L+ D  ++H+Y +  +  K 
Sbjct: 208 TNIFSSGGGLTLSEKYKLPFL-GSVPI---DPKFGEMIENLTPDSNIVHLYSKTEMSKKF 263

Query: 347 NWLARSFISR 376
           +++   F+++
Sbjct: 264 SFITNEFLNQ 273


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 370 QQNTLRLRLPPLSDFSPT*YSISQILFDIWP 462
           ++N  RLR PP  D  P  +SI Q+L D+ P
Sbjct: 179 RKNFKRLRFPPFDDEEPP-FSIDQLL-DLEP 207


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 111 LERHVLSQGPIGFKVQPRTVDG 46
           +ERH+++  PI +  + +T+DG
Sbjct: 123 VERHIITSSPIEWNNEYKTIDG 144


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 397 PPLSDFSPT*YSISQILFDIWPFRIKSVQFSKIYK 501
           P LS   PT YS+ + +FD++  R   +  SKIY+
Sbjct: 302 PVLSIICPTLYSVYKDIFDLFSQR-SFLATSKIYR 335


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -2

Query: 411 VAQWWQPKSQSV----LLMKDLASQFLFPKMCSLS*MCSRVRSLDNHCAV 274
           V QW +P    V    ++ K L ++ LF K CS   +   +   DN C V
Sbjct: 172 VQQWTRPPDALVEGMQVVSKSLQTEGLFRKSCSRKHLDIVIELYDNGCMV 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,024
Number of Sequences: 5004
Number of extensions: 55947
Number of successful extensions: 149
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)