Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30263
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0105 + 1287423-1289924                                           30   1.9  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    30   1.9  
03_05_0447 - 24421442-24422767                                         29   3.3  
10_08_0418 - 17779499-17780952,17781177-17782017                       29   4.4  
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338     29   4.4  
12_02_0758 - 22858221-22858367,22859362-22859460,22859505-228595...    28   5.9  
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    28   5.9  
05_01_0213 - 1606383-1606816,1607695-1608355                           28   7.7  

>10_01_0105 + 1287423-1289924
          Length = 833

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 295 FRQPLRCALVIRVNVEDGQTPGQVCERESRTQVEI 191
           FR P    L+I  N   GQ PG +CE E+   +++
Sbjct: 447 FRAPNLENLIISSNYITGQVPGSICESENMKHLDL 481


>06_03_1282 -
           28946363-28946533,28947234-28947272,28947399-28947566,
           28947605-28947697,28948135-28948215,28948409-28948499,
           28948657-28948728,28948803-28948903,28949283-28949381,
           28949631-28949954
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 420 WRKVAQWWQPKSQ-SVLLMKDLASQFLFPKMCSL 322
           WRK AQW+  K Q +VL++ D      F + C L
Sbjct: 224 WRKGAQWFTVKRQHAVLILSDFLYYAKFKRYCKL 257


>03_05_0447 - 24421442-24422767
          Length = 441

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 363 DLASQFLFPKMCSLS*MCSRVRSLDNHCAVRWSLGLMWKMGRPPARSANVKAEHKSKLLP 184
           D A + +    C+     + VRS+D   A+  + G +  MG  PA +A     H  +  P
Sbjct: 211 DFALRDVCAATCAAGSTAAAVRSVDGRTAIAAASGGVAAMGN-PAAAAITHVLHNKQEFP 269

Query: 183 LSNTVVSLI 157
           L+ TV  ++
Sbjct: 270 LATTVDDIL 278


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 306 CCTFTRESTSSERGTGWRGPSSAEHSATSVATTERLFSNIIFYF 437
           C  F  ++ +  R T  + P+ A+H+   + T   +F N +FYF
Sbjct: 203 CEVFVLDAPAYWRPTAQQPPAPADHNVKVMVTDPPVFLNGLFYF 246


>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
          Length = 740

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 345 GTGWRGPSSAEHSATSVATTERLFSNIIFYFANTFRHMA 461
           G  W+G S+   +   V    R +  +IF+++N+F  MA
Sbjct: 610 GGVWQGNSNGHAAGDPVMHDNRRYRYLIFFYSNSFSFMA 648


>12_02_0758 -
           22858221-22858367,22859362-22859460,22859505-22859557,
           22859674-22859728,22860204-22860284,22860779-22861213
          Length = 289

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 132 STSMDLIL*SG*RQCLIRATISTCVRLSRSQTW-PGVCPSSTLTLMTNAQRSGCLKI*PC 308
           +TS  L    G R  L  ATIS+   LSR +TW P +   +T + + N+ R  CL+   C
Sbjct: 83  TTSPVLSAPPGGRTSLPCATISSPQALSRKETWTPYLLAVATNSSIGNSTRHICLRRFAC 142


>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 298 SDPAAHLRERAHLRKEELAGEVLHQQNTLRLRLPPLSDFS 417
           S+ AA +  R  + +EELAG+V+H Q++  L  P L DFS
Sbjct: 143 SNHAARILRR-RVAEEELAGDVMH-QDSFWLVKPCLYDFS 180


>05_01_0213 - 1606383-1606816,1607695-1608355
          Length = 364

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 406 SVVATEVAECSADE-GPRQPVPLSEDVLSLVNVQQGQIFRQP 284
           +   T  + CS++E GP  P P SE++    N Q  +   QP
Sbjct: 197 TTTTTTTSSCSSEEVGPSSPSPTSEEIRLANNQQSSRRKLQP 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,880,820
Number of Sequences: 37544
Number of extensions: 352073
Number of successful extensions: 798
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)