Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30263
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    31   0.74 
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    31   0.74 
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   3.0  
U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical p...    28   5.2  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 365 RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 267
           +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 866 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 897


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 31.1 bits (67), Expect = 0.74
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 365  RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 267
            +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 1284 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 1315


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -1

Query: 376  SADEGPRQPVPLSEDVLSLVNVQQGQIFRQPLRCALVIRVNVEDGQTP 233
            S  +GP  P  + + ++++  +QQ  + +QPL+ +    ++++  QTP
Sbjct: 861  SMQQGPHNPQNIPDQMMNMQQMQQDPMSQQPLQESPQPNLHLQHHQTP 908


>U41540-10|AAK39228.1|  372|Caenorhabditis elegans Hypothetical
           protein F35H12.1 protein.
          Length = 372

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 490 LKIVHF*CEKAICRKVFAK*NIMLEKSRSVVATEVAECSADEGPRQPVPLSEDV 329
           ++I+H   E+AICRK      ++LE+    +  +      D+  +Q  P+S ++
Sbjct: 282 IQIIHQQIEEAICRKNMELVGLLLERDNLHMEHDSLRVDIDDYTQQKSPVSTNI 335


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 61   WLNFESNRTLAQHMSFKGRRRLKLLHQWILSFDQANDSV 177
            +L FE+ R+L + M +   R L  L  W L  D   D++
Sbjct: 1274 FLGFENERSLKEKMDYATNRNLGGLMIWALDLDDDADTL 1312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,968,866
Number of Sequences: 27780
Number of extensions: 318380
Number of successful extensions: 773
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)