Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30263
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.1  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          24   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   6.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   6.1  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 349 LAGEVLHQQNTLRLRLPPLSDFSPT*YSISQI 444
           L+  +LH+ +T  L +PPL++  P  Y  S I
Sbjct: 129 LSVAILHRPDTKDLPVPPLTEVFPDKYMDSGI 160


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 349 LAGEVLHQQNTLRLRLPPLSDFSPT*YSISQIL 447
           L+  V+H+ +T  ++LPP+ +  P  Y   +++
Sbjct: 142 LSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVM 174


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 349 LAGEVLHQQNTLRLRLPPLSDFSPT*YSISQIL 447
           L+  V+H+ +T  ++LPP+ +  P  Y   +++
Sbjct: 142 LSVAVIHRPDTKLMKLPPMYEVMPHLYFNDEVM 174


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 406 SVVATEVAECSADEGPRQPVPLSEDVL 326
           + V T VA C  +  P  P+P ++D L
Sbjct: 461 ATVGTTVAPCFEEPLPSLPLPGADDDL 487


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 364 GPRQPVPLSEDVLSLVN 314
           GP+ P+ +  D  SL+N
Sbjct: 43  GPQSPLDMKPDTASLIN 59


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 364 GPRQPVPLSEDVLSLVN 314
           GP+ P+ +  D  SL+N
Sbjct: 43  GPQSPLDMKPDTASLIN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,577
Number of Sequences: 438
Number of extensions: 3807
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)