Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30260
         (602 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=4...    38   0.24 
UniRef50_O07704 Cluster: Putative uncharacterized protein MLCL38...    32   9.1  

>UniRef50_Q4QQE8 Cluster: Endonuclease-reverse transcriptase; n=43;
            Eumetazoa|Rep: Endonuclease-reverse transcriptase -
            Schistosoma mansoni (Blood fluke)
          Length = 992

 Score = 37.5 bits (83), Expect = 0.24
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +1

Query: 439  VVVFILRLMREII*I-WFCC*LNIII---TKQTPMEKEILTRKWHWIGHTLRK 585
            + VFI   +R+I+ I W     N ++   T Q P E+EI  ++W WI HTLRK
Sbjct: 869  IQVFINSCLRKILRIRWPDTISNKLLWETTNQIPAEEEIRKKRWKWIWHTLRK 921


>UniRef50_O07704 Cluster: Putative uncharacterized protein
           MLCL383.30c; n=7; Mycobacterium leprae|Rep: Putative
           uncharacterized protein MLCL383.30c - Mycobacterium
           leprae
          Length = 164

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 239 YNASPIPQKHNKYPN*NFCVFDLYSTMFHPSPW 337
           +  +P+P+  N YP+ + C+   +ST   PSPW
Sbjct: 12  HTKTPLPRGANNYPHTHACIDIAFSTAQVPSPW 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,422,778
Number of Sequences: 1657284
Number of extensions: 11930414
Number of successful extensions: 22692
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22674
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)