Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30260
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   1.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   6.4  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    25   8.5  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    25   8.5  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 84  KLLSTYSVRKIGTCLGGIRTPLHR*IRMHRMSYPLGHDDFK*VKTRKSQFYSTTLAPFL 260
           +LL TY+    G+ LGG+   +HR +  H  S P  H+    V        S+ L+P L
Sbjct: 129 RLLQTYNSFH-GSGLGGLFPNIHRELESHGFSLPT-HEQSSPVAESLDNSVSSALSPHL 185


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 522 DTNGEGDPYAEVALDWSHFEKARYP 596
           D +GE D   +V  D S F+  RYP
Sbjct: 532 DASGEEDDSPKVLNDQSFFDSVRYP 556


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 2   SNYANYNFACLISITQCYSFTVAVNHKQIVEYVFC*KNWYLPGGHSNT 145
           +N  + N  CLI ++Q  +  V VNH +  E  F  + W L   +SN+
Sbjct: 626 ANCESMNVRCLIYVSQTINEIVRVNHFEFQE-KFVGQLWKLYMENSNS 672


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 213 KTRKSQFYSTTLAPFLRNTINTQIRI 290
           K      YS  LAP L+NTI+ QI+I
Sbjct: 357 KIANKSVYSN-LAPTLKNTIHAQIKI 381


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 216 TRKSQFYSTTLAPFLRNTINTQIRIFACLICIPRCSTLHRG 338
           TRKSQFYS+   P L       I +F+ L+ I   + LH+G
Sbjct: 158 TRKSQFYSSKFKPLLW----FGITLFSTLLII---TLLHKG 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,723
Number of Sequences: 5004
Number of extensions: 53915
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)