Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30260
(602 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 49 3e-06
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33) 49 3e-06
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023) 48 4e-06
SB_21570| Best HMM Match : AT_hook (HMM E-Value=2) 46 2e-05
SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 46 2e-05
SB_32427| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06) 31 0.95
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36) 28 6.7
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 49.2 bits (112), Expect = 3e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WIGHTLRKP T++
Sbjct: 398 TKQQPVDQDVLQRRWRWIGHTLRKPATNI 426
>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
Length = 585
Score = 49.2 bits (112), Expect = 3e-06
Identities = 17/29 (58%), Positives = 25/29 (86%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WIGHTLRKP T++
Sbjct: 456 TKQQPVDQDVLQRRWRWIGHTLRKPATNI 484
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 48.4 bits (110), Expect = 4e-06
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++ +L R+W WIGHTLRKP T++
Sbjct: 503 TKQQPVDQNVLQRRWRWIGHTLRKPATNI 531
>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
Length = 423
Score = 48.4 bits (110), Expect = 4e-06
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++ +L R+W WIGHTLRKP T++
Sbjct: 389 TKQQPVDQNVLQRRWRWIGHTLRKPATNI 417
>SB_21570| Best HMM Match : AT_hook (HMM E-Value=2)
Length = 148
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WI HTLRKP T++
Sbjct: 71 TKQQPVDQDVLQRRWRWIDHTLRKPATNI 99
>SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WIGHTL KP T++
Sbjct: 179 TKQQPVDQDVLHRRWRWIGHTLPKPATNI 207
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WIGHTL KP T++
Sbjct: 153 TKQQPVDQDVLHRRWRWIGHTLPKPATNI 181
Score = 46.0 bits (104), Expect = 2e-05
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
TKQ P+++++L R+W WIGHTL KP T++
Sbjct: 513 TKQQPVDQDVLHRRWRWIGHTLPKPATNI 541
>SB_32427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1
Query: 514 TKQTPMEKEILTRKWHWIGHTLRKPDTHL 600
T+Q +E I RKW WIGHT RKP +++
Sbjct: 279 TEQERIEVVIRRRKWRWIGHTFRKPSSNI 307
>SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06)
Length = 451
Score = 30.7 bits (66), Expect = 0.95
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +1
Query: 367 YVFQ*QYSYLPNYAIITDINYASLVVVFILRLMREII*IWFCC*LNIIITKQTPMEKEIL 546
YVF+ + S N ++ IN V++ I+ ++ II I + II+ + + ++
Sbjct: 245 YVFRLEMSRHKNLSLYAFINIIITVIIIIVVIIITIIIIIIFIIIIIILITIIIITRSLI 304
Query: 547 TRKWHWIGHTLRK 585
KWH+I K
Sbjct: 305 LNKWHFIAGVWNK 317
>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 421 INYASLVVVFILRLMREII*IWFCC*LNIIITKQTPMEKEILTRKW 558
I A L+V +L L +I W C I T P +K++L + W
Sbjct: 47 IGVACLMVSLMLCLYYIVIIAWCCYFFFISFTSDLPWKKQLLCQNW 92
>SB_58458| Best HMM Match : Guanylate_cyc (HMM E-Value=1.2e-36)
Length = 1065
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 48 NVIHSPWQSIINKLLSTYSVRKIGTCLGGIRTPLHR*IRMHRMSYPL 188
++ ++P S NK+L TY + K + R H +R H++ P+
Sbjct: 959 SLTYTPASSYYNKILVTYELSKWHYVMLSKRKDYHHEVRAHQICIPI 1005
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,430,611
Number of Sequences: 59808
Number of extensions: 373180
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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