Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30260
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.3  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 288 IFACLICIPRCSTLHRGSIS*TFIKYLCISIAIFL 392
           + A LI +P   +     +S  +I + C+S  IFL
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 288 IFACLICIPRCSTLHRGSIS*TFIKYLCISIAIFL 392
           + A LI +P   +     +S  +I + C+S  IFL
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 288 IFACLICIPRCSTLHRGSIS*TFIKYLCISIAIFL 392
           + A LI +P   +     +S  +I + C+S  IFL
Sbjct: 99  LVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 477 NNFPH*SQNENHN*TCIINIGNYCIIRQVGILLLKYIG 364
           NN+ +   N N+N  C     N   I Q+ I +  Y G
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYG 131


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 477 NNFPH*SQNENHN*TCIINIGNYCIIRQVGILLLKYIG 364
           NN+ +   N N+N  C     N   I Q+ I +  Y G
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYG 131


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 477 NNFPH*SQNENHN*TCIINIGNYCIIRQVGILLLKYIG 364
           NN+ +   N N+N  C     N   I Q+ I +  Y G
Sbjct: 94  NNYKYNYNNNNYNNNCKKLYYNINYIEQIPIPVPVYYG 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,827
Number of Sequences: 438
Number of extensions: 4462
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)