Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30259
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    30   0.34 
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    27   3.2  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   3.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   5.6  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   7.4  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   7.4  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   9.7  

>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 512 PSLPISRGCPSRYQRCSRRSSAGNTTRSSPES 607
           P+ P++   PS Y R + RSSA +T RS+P S
Sbjct: 188 PAQPVNNVLPS-YVRSNSRSSARSTARSAPRS 218


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 159 WKSRFYKLCESILYCLPGRKLRTTRSSTVG 70
           W++ F+  C+S ++CL   K     SS +G
Sbjct: 158 WRNMFFTFCKSPIFCLVLLKAENKLSSHLG 187


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 365 WPAPSKASTIPLPRELWLREGIG 297
           WP+ SK  T+ + R LW+ E  G
Sbjct: 92  WPSASKNDTLRVVRGLWMYEDTG 114


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
 Frame = +2

Query: 527 SRGCPSRYQ----RCSRRSS 574
           SR CPS+YQ    RC+R SS
Sbjct: 410 SRSCPSKYQCYSCRCARNSS 429


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 584  YFPLTIACCSAGTERDSLVILAAKVLINA 498
            YFP+   C    TER  L++ + K ++ +
Sbjct: 947  YFPILKLCAEPSTERHVLLVTSLKTMLTS 975


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -3

Query: 112 PGKKTSYHAVINSGFPEVF--FATYHPAMDLWLHG 14
           PG  T Y A      PE+   F++YH  +D+W  G
Sbjct: 182 PGFMTEYVATRWYRAPEIMLSFSSYHKGIDVWSVG 216


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 530 VILAAKVLINAIPASAFLWSFMSIISLTDAVALTSIIFRPLVDSLGGNG 384
           V+L   +L+N +P   + W F + + L     + +II+ P+  S   +G
Sbjct: 216 VLLVFTILLNQVPPRYYKWIFKASMLLMFIDYVMNIIWVPVATSKKPDG 264


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 286 ARGTHALTSPHTPRRAATG 230
           A+G + +  P TPRRA+TG
Sbjct: 543 AQGMNPMKMPLTPRRASTG 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,168
Number of Sequences: 5004
Number of extensions: 58532
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)