Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30259
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 33 0.27
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 31 0.82
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.82
07_03_0425 - 18070607-18070712,18071771-18072744 31 1.1
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 29 2.5
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 29 2.5
01_01_0244 - 2005152-2005649,2006186-2006254 29 3.3
07_03_0418 + 17979504-17980964 29 4.4
07_03_0415 + 17920383-17921843 29 4.4
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293... 26 5.1
02_04_0616 + 24416924-24418162 28 5.8
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 28 5.8
07_03_0653 + 20297439-20298011 28 7.6
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 28 7.6
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +3
Query: 423 NRCERHSICK*NDRHE----RPKKR*CWYGVDQDLRCQYHEAVPLGTSAAAGDRQREIRR 590
NR +RHSIC R E R G D+ L C+ +V G+ ++ G+ +IRR
Sbjct: 113 NRHQRHSICSLGGRRELQGAELLPRLPCPGSDEALECESKASV--GSVSSKGEEVEQIRR 170
Query: 591 GRHRSPSSTMPRR 629
H + +P R
Sbjct: 171 SSHSFENLKLPER 183
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 31.1 bits (67), Expect = 0.82
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +1
Query: 388 FPPKESTKGLKIIDVSATASVSEMIDMNDQRNADAGMALIKTFAANITRLSLSVPALQQA 567
F K S K L T ++S+ + ND+ + ++ K + +L+ VPA +
Sbjct: 217 FSNKPSLKDLVFAQAKTTDALSKKLAANDKILENINLSFNKMIETQLAQLTSYVPANETG 276
Query: 568 IVSGKYDAVVTGVLLQRCRG 627
+ G+ D+ V V RG
Sbjct: 277 RIPGQPDSSVENVKAITTRG 296
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -2
Query: 416 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 318
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 265 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 378
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 497 WR*SRPSLPISRGCPSRYQRCSRRSSAGNTTRSSPESFFNDAEAGYGAVPSSAL 658
WR S PS+P C Y + +R +A + R+S A A G P + +
Sbjct: 24 WRCSAPSMPDKTVCEKHYVQAKKR-AASSALRASLRRSSASASAARGTTPPARM 76
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 446 DAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 327
D V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 416 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 318
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 265 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 378
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 265 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 378
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>08_02_1047 -
23927822-23928112,23928736-23928981,23929119-23929395,
23929522-23929799,23931147-23931572
Length = 505
Score = 26.2 bits (55), Expect(2) = 5.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 337 IVEALLGAGHEVTWATPFPPKESTK---GLKIIDVS-ATASVSEMIDMNDQRNADAGMAL 504
++ A+ GAG VTW T + K GLK A V D+++Q + G
Sbjct: 371 LIRAVRGAGQIVTWVTDPMHGNTMKAPCGLKTRSFDRILAEVRAFFDVHEQEGSHPGGVH 430
Query: 505 IKTFAANIT 531
++ N+T
Sbjct: 431 LEMTGQNVT 439
Score = 20.6 bits (41), Expect(2) = 5.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 595 VTGVLLQRCRGGLRSSTFKCPGS 663
+TG + C GG R+ TF GS
Sbjct: 433 MTGQNVTECIGGSRTVTFDDLGS 455
>02_04_0616 + 24416924-24418162
Length = 412
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 499 ALIKTFAANITRLSLSVPALQQA 567
ALIK +AN+ +L SV LQQA
Sbjct: 11 ALIKALSANVDKLQASVTTLQQA 33
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 594 DRVVFPADDRLLQRWYREGQPRDIGSEGLD 505
+ VV ADD + RWY +GQ D EG D
Sbjct: 97 ESVVVFADDAAVVRWYSDGQAVDPRYEGDD 126
>07_03_0653 + 20297439-20298011
Length = 190
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1
Query: 192 RKVIYVFAIDVWKSRFYKLCESILYCLPGRKLRTTRSSTVGFRRSFLPRTTPLWTCGSTV 13
R + V A++V+ S ++ L E I LP T V + R + + TCG TV
Sbjct: 114 RAAVEVDAVEVFSSPYFPL-EGIAGALPFETATTVAGKAVVLGVLKI-RASSVVTCGVTV 171
Query: 12 FP 7
FP
Sbjct: 172 FP 173
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 492 SISVSLVVHVDHFTYRCC 439
SISVS+ +H HF + CC
Sbjct: 379 SISVSMSIHQTHFCFVCC 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,360,056
Number of Sequences: 37544
Number of extensions: 454550
Number of successful extensions: 1537
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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