Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30259
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45042| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 
SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)               31   0.84 
SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22)                   30   1.5  
SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15)         27   4.3  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_59532| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_8195| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  

>SB_45042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -1

Query: 663 GSRALEGTAP*PA-----SASLKKDSGDDRVVFPADD 568
           GS AL   +P P      SAS +++S DD V+FP DD
Sbjct: 98  GSEALTDASPTPTNNVVGSASDRRESADDEVIFPIDD 134


>SB_38223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -2

Query: 404 DSLGGNGVAH-VTSWPAPSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTK 246
           D L  N + + V+S P P K  +   P+ LW   G+  +Q     RA+ TTH +
Sbjct: 115 DFLDLNSIENEVSSLPPPPKVISGGFPKYLWTPSGLSQSQVRSRNRANGTTHAR 168


>SB_7592| Best HMM Match : PI-PLC-Y (HMM E-Value=1.1e-33)
          Length = 997

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 356 PSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNWR 228
           P+   T P  R LW  EGI + + T+   A +T   K+ S W+
Sbjct: 217 PNAFVTKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGWK 259


>SB_51507| Best HMM Match : SH2 (HMM E-Value=2.3e-22)
          Length = 192

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 356 PSKASTIPLPRELWLREGIGNTQSTWYARADVTTHTKKSSNW 231
           P+   T P  R LW  EGI + + T+   A +T   K+ S W
Sbjct: 122 PNAFVTKPACRALWDYEGINDQEMTFCRGAFITNVVKEDSGW 163


>SB_13990| Best HMM Match : Ribosomal_L19 (HMM E-Value=4.1e-15)
          Length = 267

 Score = 26.6 bits (56), Expect(2) = 4.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 137 CVKAFCTASREENFVPRGHQQWV 69
           CV +    +R +N+VP+GH ++V
Sbjct: 137 CVGSTVAVTRADNYVPKGHVRFV 159



 Score = 20.6 bits (41), Expect(2) = 4.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -2

Query: 335 PLPRELWLREGIGNTQSTWYARADVTT 255
           P+PR LW     G   S   A  D+ T
Sbjct: 91  PIPRYLWKETDNGFPPSPEEAGVDIKT 117


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 509 RPSLPISRGCPSRYQRCSRRSSAGNTTRSSPES 607
           RP +P+S   P+ YQR    S++ +T  SSP +
Sbjct: 41  RPPVPVSYELPASYQRSVPVSTSSSTPVSSPSN 73


>SB_1950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 322 SCGCVKVSGIRRARGTHALTSPHT 251
           S  C +V  I+ AR TH L +PHT
Sbjct: 182 SDNCARVWDIKEARCTHVLDTPHT 205


>SB_23855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 183 IYVFAIDVWKSRFYKLCESILYCLPGRKLR 94
           +YVF   VW   F  +C  I+YC  G++ R
Sbjct: 346 VYVFC--VWMVFFNSVCHPIVYCFIGKQYR 373


>SB_59532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 298 PIPSRSHNSLGKGIVEALLGAGHEVTWATPFPPKESTKGLKIIDVSATASVSEMI 462
           P PSRSHN L    V  + G    +     F  + S+K  +++  S   +  EMI
Sbjct: 16  PTPSRSHNDLRPAPVLVMWGCASALQQQYSFLARISSKRARLMLASKICTGPEMI 70


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 391  PPKESTKGLKIIDVS--ATASVSEMIDMNDQRNADAGMALIKTFAANITRLSLSVPALQQ 564
            PP  S+  +  ++ S  ATA+ S  ++ N      +G+++    +  +   S  +PA+  
Sbjct: 1199 PPSSSSTTITTLNASVMATATPSASLEANASTMLSSGISVPSIDSTVLPDSSSYIPAVTT 1258

Query: 565  AIVSGKYD 588
             + +G YD
Sbjct: 1259 VVQTGSYD 1266


>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 96  EVFFPGGSTKCFHTVCRI 149
           EVF PGG  +C +  CRI
Sbjct: 401 EVFDPGGHVRCIYNPCRI 418


>SB_8195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 298 GIRRARG-THALTSPHTPRRAATGDTSFRYY 209
           G RR+ G T  + +PH P R   GD  FR Y
Sbjct: 30  GPRRSDGQTTTIITPHPPPRLQIGDNIFRSY 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,491,458
Number of Sequences: 59808
Number of extensions: 474759
Number of successful extensions: 1819
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1819
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)