Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30259
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    29   2.1  
At3g15390.1 68416.m01951 expressed protein low similarity to PRL...    28   4.8  
At2g02880.1 68415.m00238 mucin-related similar to putative mucin...    28   4.8  
At4g21350.1 68417.m03084 U-box domain-containing protein similar...    28   6.4  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    28   6.4  
At1g52420.1 68414.m05917 glycosyl transferase family 1 protein c...    28   6.4  
At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease fami...    27   8.4  
At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)...    27   8.4  
At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)...    27   8.4  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    27   8.4  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    27   8.4  
At4g20850.1 68417.m03025 subtilase family protein contains simil...    27   8.4  
At3g52600.1 68416.m05794 beta-fructosidase, putative / beta-fruc...    27   8.4  
At2g18465.1 68415.m02150 DNAJ heat shock N-terminal domain-conta...    27   8.4  

>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 179 MYLR*TSGNLDSTNCVKAFCTASREENFVP 90
           MYL  +S N+DS NC++ F T ++    VP
Sbjct: 172 MYLAGSSENVDSLNCIQVFSTKTQTWKPVP 201


>At3g15390.1 68416.m01951 expressed protein low similarity to
           PRLI-interacting factor N [Arabidopsis thaliana]
           GI:11139276
          Length = 468

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 319 NSLGKGIVEALLGAGHEVTWATPFPPKESTKGLKI 423
           NS+  G V +++G  +  T      PKE+TK LKI
Sbjct: 98  NSISNGTVSSVIGKEYARTRPISNAPKEATKPLKI 132


>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
           GI:18071389 [Oryza sativa]
          Length = 314

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 388 FPPKESTK-GLKIIDVSATASVSEMIDMNDQRNADAG 495
           FP KEST   ++ IDV A A V +M +  D+R   +G
Sbjct: 73  FPVKESTATAIEEIDVEAKAFVEDMNEHWDERRGKSG 109


>At4g21350.1 68417.m03084 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 374

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +1

Query: 430 VSATASVSEMIDMNDQRNADAGMALIKTFAANITRL--SLSVPALQQAIVSGKYDAVVTG 603
           +SA  S+  + +  +++ +   +  + +F  N  R+    SVP L +A  SG   AV   
Sbjct: 221 ISALVSLLRVGNDRERKESATALYALCSFPDNRKRVVDCGSVPILVEAADSGLERAVEVL 280

Query: 604 VLLQRCRGG 630
            LL +CRGG
Sbjct: 281 GLLVKCRGG 289


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 503 NAIPASAFLWSFMSIISLTDAVALTSIIFRPLVDSLGGNGVAHVT-SWPAPS 351
           +A+P+      + + +SL         +  PL  S  GNG++H   +WP P+
Sbjct: 371 SAVPSPRSNADYAAALSLLPGSPSGVSVMSPLSPSAAGNGMSHSNMAWPQPN 422


>At1g52420.1 68414.m05917 glycosyl transferase family 1 protein
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 670

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 346 LQLSLCRESCGCVKVSGIRRARGTHALTSPHTPRRAATGDTSFRYY 209
           ++LS  R++     +SG    RGT  + S  TPRR   G  +F+++
Sbjct: 4   IRLSPLRQTSVKSSLSGRSTPRGTPRVYSGRTPRRGHGGGGAFQWF 49


>At5g50300.1 68418.m06228 xanthine/uracil/vitamin C permease family
           protein contains Pfam profile PF00860: Permease family
          Length = 530

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 316 GCVKVSGIRRARGTHALTSPHTPRRAATGDTSFRYY 209
           G V V+ I   RGT     PHTP     GD+++ Y+
Sbjct: 277 GIVFVTAISWIRGTQVTIFPHTP----LGDSNYNYF 308


>At4g37670.2 68417.m05327 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 613

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 603 SGDDRVVFPADDRLLQRWYREGQP 532
           +GD     P DD+   RW+RE  P
Sbjct: 70  AGDVEAEHPVDDKQFVRWFREAWP 93


>At4g37670.1 68417.m05328 GCN5-related N-acetyltransferase (GNAT)
           family protein / amino acid kinase family protein
           similar to SP|P08205 from Escherichia coli ; contains
           Pfam profile PF00696: Amino acid kinase family
          Length = 543

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 603 SGDDRVVFPADDRLLQRWYREGQP 532
           +GD     P DD+   RW+RE  P
Sbjct: 70  AGDVEAEHPVDDKQFVRWFREAWP 93


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 506 SRPSLPISRG-CPSRYQRCSRRSSAGNTTRSSPESFFNDAEAG 631
           +RPS P SRG  PSR ++ +  +S  ++T +S  SF  D + G
Sbjct: 382 ARPSTPPSRGISPSRIRQTT--TSTQSSTTTSVLSFITDVKKG 422


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 506 SRPSLPISRG-CPSRYQRCSRRSSAGNTTRSSPESFFNDAEAG 631
           +RPS P SRG  PSR ++ +  +S  ++T +S  SF  D + G
Sbjct: 382 ARPSTPPSRGISPSRIRQTT--TSTQSSTTTSVLSFITDVKKG 422


>At4g20850.1 68417.m03025 subtilase family protein contains
           similarity to Tripeptidyl-peptidase II (EC 3.4.14.10)
           (TPP-II) (Tripeptidyl aminopeptidase)
           (Swiss-Prot:P29144) [Homo sapiens]
          Length = 1380

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 341 TIPLPRELWLREGIGNTQST-WYARADVTTHTKKSS 237
           TIP  R ++LREG    QST W  + D   H   S+
Sbjct: 643 TIPTSRGIYLREGTACRQSTEWTIQVDPKFHEGASN 678


>At3g52600.1 68416.m05794 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase [Daucus carota] GI:18324
          Length = 590

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 470 FMSIISLTDAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKA 345
           F+ +  L   ++L S+I   +V+S G  G   +TS   P+KA
Sbjct: 511 FVDVGLLDGKISLRSLIDHSVVESFGAKGKTVITSRVYPTKA 552


>At2g18465.1 68415.m02150 DNAJ heat shock N-terminal
           domain-containing protein low similarity to dnaJ
           [Clostridium acetobutylicum] GI:144832; contains Pfam
           profile PF00226 DnaJ domain
          Length = 268

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 645 GTAP*PASASLKKDSGDDRVVFPADDRLLQRWYREGQPRD 526
           G +P      +KK S   R   P D +  +RW+REG P D
Sbjct: 101 GPSPLIRDRHMKKKSPPGRGKKPRDKKT-KRWHREGNPDD 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,028
Number of Sequences: 28952
Number of extensions: 326194
Number of successful extensions: 998
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)